View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_84 (Length: 357)
Name: NF20633_low_84
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_84 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 148 - 338
Target Start/End: Original strand, 3723485 - 3723675
Alignment:
| Q |
148 |
ataaaaaatatatttcaatgaaaaataatagggaagaaagatcaccagcctcaaaatgtcagcatgaagtttttcttctgcctcaatagctttgtcaaga |
247 |
Q |
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| T |
3723485 |
ataataaatatatttcaatgaaaaataacagggaagtaagatcaccagcctcaaaatgtcagcatgaagtttttcttctgcctcaatagctttgtcaaga |
3723584 |
T |
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| Q |
248 |
attccacttgatgtagaactatagacaaaaaggtgaactaaatatgggcaatcaattacttctagcaccacaaagaattgtgaatttaatc |
338 |
Q |
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| T |
3723585 |
actccacttgatgtagaactatagacaaaaaggtgaactaaatatgggcaatcaattacttctaacaccacaaagaattgtgaatttaatc |
3723675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 3723315 - 3723459
Alignment:
| Q |
11 |
acatcatcatcaactttgacataaaattctgcatcccacaaggcaacaacagttgaaaaataggttttcgtcttagctgatagttccaaatatccttcga |
110 |
Q |
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| T |
3723315 |
acatcatcatcaactttgacataaaattctgcatcccacaaggcaagaacagttgaaaaataggttttcgtcttagctgatagttccaaatatccttcga |
3723414 |
T |
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| Q |
111 |
catggttctgttcaaacatggatgtatttattttcatataaaaaa |
155 |
Q |
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| T |
3723415 |
catggttctgttcaaacatggatgtatttattttcatataaaaaa |
3723459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 37186402 - 37186505
Alignment:
| Q |
11 |
acatcatcatcaactttgacataaaattctgcatcccacaaggcaacaacagttgaaaaataggttttcgtcttagctgatagttccaaatatccttcga |
110 |
Q |
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| T |
37186402 |
acatcatcatcaactttgatatagaagtcagcatcccacaagttaacagcagtggcaaaataggtctttgtctttgctgataattcaaggtatccttcaa |
37186501 |
T |
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| Q |
111 |
catg |
114 |
Q |
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|||| |
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| T |
37186502 |
catg |
37186505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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