View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_85 (Length: 356)
Name: NF20633_low_85
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_85 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 339
Target Start/End: Original strand, 29232520 - 29232838
Alignment:
| Q |
9 |
gaagaaaatcaaaatccagtaaaacacgacnnnnnnnntggattctggctccataatcatctatctcctccttgtttcttttgtttctcctatttactct |
108 |
Q |
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| T |
29232520 |
gaagaaaatcaaaatccagtaaagcacgacaaaaaaaatggattctggctccataatcatctatctcctccttgtttcttttgtttctcctatttactct |
29232619 |
T |
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| Q |
109 |
ttcaaaacaagtagccatcaattagagaatcaaacttttcaaatagagaagtttcacaagttgaaaaagaccataaaaaaccgtcttcaacagattaaca |
208 |
Q |
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| T |
29232620 |
ttcaaaacaagtagctatcaattagagaatcaaacttttcaaatagagaagtttcacaagttgaaaaagaccataaaaaaccgtcttcaacagattaaca |
29232719 |
T |
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| Q |
209 |
agcctcctattaagacaatccaggtattttgaaataaatctcaaaagttttgtagtacgtttggaggggagaatttaagggtaacttaaattctttgttt |
308 |
Q |
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| T |
29232720 |
agcctcctattaagacaattcaggtattttgaaataaatctcaaaacttttgtagt---tt---------aattttaagggtaacttaaattctttgttt |
29232807 |
T |
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| Q |
309 |
ctcctatttactccttatagtattggaatat |
339 |
Q |
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||||||||||||| ||||||||||||||||| |
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| T |
29232808 |
ctcctatttactctttatagtattggaatat |
29232838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 30910682 - 30910623
Alignment:
| Q |
190 |
cgtcttcaacagattaacaagcctcctattaagacaatccaggtattttgaaataaatct |
249 |
Q |
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|||||||||||||| ||||||||| || |||||||||| || |||| || |||||||||| |
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| T |
30910682 |
cgtcttcaacagatcaacaagcctgctgttaagacaattcaagtatgttaaaataaatct |
30910623 |
T |
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