View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_87 (Length: 353)
Name: NF20633_low_87
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_87 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 345
Target Start/End: Original strand, 46641396 - 46641720
Alignment:
| Q |
19 |
aagaaagtctgaactcaatattaagagttgcactgtcagagattgttatcgaagaatagctacttgagagaatttgtattgaaggttccatatctgattg |
118 |
Q |
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| T |
46641396 |
aagaaagtctgaactcaatattaagagttgcactgtcagagattgttatcgaagaatagctacttgagagaatttgtattgaaggttccatatctgattg |
46641495 |
T |
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| Q |
119 |
ataatttatctgtaaaaataaatatattctttcttaagnnnnnnnnnnnnnngatttacatgtttttgcaatatttagccaacattgccatcttcaatca |
218 |
Q |
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| T |
46641496 |
ataatttatctgtaaaaataaatatattctttcttaagaaaaaaaaaaaa--gatttacatgtttttgcaatatttagccaacattgccatcttcaatca |
46641593 |
T |
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| Q |
219 |
aaaacctttcttcttgttctaaaactgcattcccatgatctgaacaatgacgacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46641594 |
aaaacctttcttcttgttctaaaactgcattcccatgatctgaacaatgacgacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaa |
46641693 |
T |
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| Q |
319 |
aggatcttagtgtgtgtctcttctttt |
345 |
Q |
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| T |
46641694 |
aggatcttagtgtgtgtctctcctttt |
46641720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 326
Target Start/End: Original strand, 46172803 - 46172923
Alignment:
| Q |
206 |
ccatcttcaatcaaaaacctttcttcttgttctaaaactgcattcccatgatctgaacaatgacgacgcagcattgtttcacctcttgtatgagccttgc |
305 |
Q |
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| T |
46172803 |
ccatctccaatcaaatgcttttcttcttgtactgcaactgcattcccgtgatctgaacaatgacgatgcagtgttgatttgccttttgttcgagccttgc |
46172902 |
T |
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| Q |
306 |
cgcaaggattgaaaggatctt |
326 |
Q |
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| T |
46172903 |
ggcaaggattgaaaagatctt |
46172923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 249 - 333
Target Start/End: Complemental strand, 46620440 - 46620356
Alignment:
| Q |
249 |
tcccatgatctgaacaatgacgacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatcttagtgtgt |
333 |
Q |
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| T |
46620440 |
tcccatgatctgaacaacaacgatgcagcattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttggtgtgt |
46620356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 326
Target Start/End: Complemental strand, 46630949 - 46630860
Alignment:
| Q |
237 |
ctaaaactgcattcccatgatctgaacaatgacgacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatctt |
326 |
Q |
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| T |
46630949 |
ctaaaactgcagtaccatgatctgaacaatgacgaggcagcattgttttgcctcttttacaatccttgcagcaaggattgagatgatctt |
46630860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 333
Target Start/End: Complemental strand, 46639182 - 46639074
Alignment:
| Q |
225 |
tttcttcttgttctaaaactgcattcccatgatctgaacaatgacgacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatc |
324 |
Q |
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|||||||||| |||||| || | ||||||||||||||||| | | |||||||| ||| |||| |||| ||||||||| ||||||||||||||||| |
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| T |
46639182 |
tttcttcttgcgctaaaattgtagtcccatgatctgaacaacaataatgcagcattattttgcctcatgtacgagccttgcgacaaggattgaaaggatc |
46639083 |
T |
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| Q |
325 |
ttagtgtgt |
333 |
Q |
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|| |||||| |
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| T |
46639082 |
ttggtgtgt |
46639074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 326
Target Start/End: Complemental strand, 1537937 - 1537855
Alignment:
| Q |
244 |
tgcattcccatgatctgaacaatgacgacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatctt |
326 |
Q |
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| T |
1537937 |
tgcattcccatgatcttaacaaagacgaagcatcattgttttgcctctcatacgaggcttgcggcaaggattgaaaggatctt |
1537855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 18373850 - 18373891
Alignment:
| Q |
225 |
tttcttcttgttctaaaactgcattcccatgatctgaacaat |
266 |
Q |
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| T |
18373850 |
tttcttcttgtgctaaaactgcagtcccatgatctgaacaat |
18373891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 15767970 - 15768013
Alignment:
| Q |
225 |
tttcttcttgttctaaaactgcattcccatgatctgaacaatga |
268 |
Q |
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||||||||||| ||||||||| ||| |||||||||||||||||| |
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| T |
15767970 |
tttcttcttgtgctaaaactgaattaccatgatctgaacaatga |
15768013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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