View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_low_9 (Length: 674)

Name: NF20633_low_9
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_low_9
NF20633_low_9
[»] chr1 (1 HSPs)
chr1 (6-657)||(18925353-18925993)


Alignment Details
Target: chr1 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 6 - 657
Target Start/End: Original strand, 18925353 - 18925993
Alignment:
Q  6 agcagcacagagcttatgtagataacttgaacaagcaaattgaaggaacagatctagatgggaagtcactagaagaaaccataattatgtcgtacaataa 105  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18925353 agcaccacagagcttatgtagataacttgaacaagcaaattgaaggaacagatctagatgggaagtcactagaagaaaccataattatgtcatacaataa 18925452  T
Q  106 tggcgacattcttccagctttcaacaatgcagcacaggtatgcatatacttatacacatacagtctaattcatttttctgaatcacagcatagtaatctt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| |||||||||||| ||||||||||||||||||||||||||    
T  18925453 tggcgacattcttccagctttcaacaatgcagcacaggtatgcttacacttatagacataaagtctaattcatgtttctgaatcacagcatagtaatctt 18925552  T
Q  206 gatcattttatttcaggtatggaaccatgatttcttctgggagtctatgaaacctggtggtggtggaaagccatctggggaacttctcaaactgattgaa 305  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18925553 gatcaatttattttaggtatggaaccatgatttcttctgggagtctatgaaacctggtggtggtggaaagccatctggggaacttctaaaactgattgaa 18925652  T
Q  306 agagactttggttcatttgaaaaattcgttgaacagttcaagcttgctgcttcaacacaatttggttcaggatgggcatggcttgcatgtgagtaaatta 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18925653 agagactttggttcatttgaaaaattcgttgaacagttcaagcttgctgcttcaacacaatttggttcaggatgggcatggcttgcatgtgagtaaatta 18925752  T
Q  406 ccctttccaccatatgcttattttttggcatttttgttctcttcggtatatttaactcagaaagtgctctctaccctgttctctttttctttgtcatcta 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||         
T  18925753 ccctttccaccatatgcttattttttggcatttttgttctcttcggtatatttaactcggaaagcgctctctaccctgttttctttttctttgtc----- 18925847  T
Q  506 cgaaatacagataaggaaagcagacttgatgttggaaatgcagtaaatcctcttgcaactgaggaggacaaaaagctagtcgtgctgaagagtcctaatg 605  Q
          ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18925848 ------acagataaggaaaacagacttgatgttggaaatgcagtaaatcctcttgcaactgaggaggacaaaaagctagtcgtgctgaagagtcctaatg 18925941  T
Q  606 ctgtgaacccccttgtttggaaccatcatcatgtaagtagtacggactagat 657  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18925942 ctgtgaacccccttgtttggaaccatcatcatgtaagtagtacggactagat 18925993  T

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