View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20633_low_91 (Length: 348)

Name: NF20633_low_91
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20633_low_91
NF20633_low_91
[»] chr4 (4 HSPs)
chr4 (106-330)||(44634255-44634479)
chr4 (12-109)||(44634602-44634699)
chr4 (36-106)||(44398043-44398109)
chr4 (113-145)||(44397891-44397923)
[»] chr7 (2 HSPs)
chr7 (138-203)||(49128650-49128715)
chr7 (28-106)||(49129234-49129312)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 106 - 330
Target Start/End: Complemental strand, 44634479 - 44634255
Alignment:
Q  106 ttgcccttttttattcataatgtatttcatgtatatatattgaattgaactaaattggatcatctttatctcaaaatgtgcttagcctgatcactcttct 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  44634479 ttgcccttttttattcataatgtatttcatgtatatatattgaattgatctaaattgaatcatctttatctcaaaatgcgcttagcctgatcactcttct 44634380  T
Q  206 tttcggttgacatatctgtctaccactaaaatcgttcataggattctttgtatttatgattattatcttctttcataaattatcgcataatacctcaaat 305  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  44634379 tttcggttgacatatccgtctaccactaaaatcgttcataggattctttgtattgatgattattatcttcttttataaattatcgcataatacctcaaat 44634280  T
Q  306 ataattttgagccgcgccacgtgtg 330  Q
    |||||||||||||||||||||||||    
T  44634279 ataattttgagccgcgccacgtgtg 44634255  T

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Target: chr4; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 44634699 - 44634602
Alignment:
Q  12 tcatcactttatatgggaatcctaacaatccttcttaagttcacttgctaaaaaattgatctcactcctctcaaatctcttttgtatgtatgctttgc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44634699 tcatcactttatatgggaatcctaacaatccttcttaagttcacttgctaaaaaattgatctcactcctctcaaatctcttttttatgtatgctttgc 44634602  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 44398109 - 44398043
Alignment:
Q  36 acaatccttcttaagttcacttgctaaaaaattgatctcactcctctcaaatctcttttgtatgtatgctt 106  Q
    ||||||||||||||||||||||||||||    | |||||||||||  ||||||||||||||||||||||||    
T  44398109 acaatccttcttaagttcacttgctaaa----tcatctcactccttccaaatctcttttgtatgtatgctt 44398043  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 145
Target Start/End: Complemental strand, 44397923 - 44397891
Alignment:
Q  113 tttttattcataatgtatttcatgtatatatat 145  Q
    ||||| |||||||||||||||||||||||||||    
T  44397923 ttttttttcataatgtatttcatgtatatatat 44397891  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 49128715 - 49128650
Alignment:
Q  138 atatatattgaattgaactaaattggatcatctttatctcaaaatgtgcttagcctgatcactctt 203  Q
    ||||| ||||||||||||||||||||  |||||||||||||| || |||||||| ||||| |||||    
T  49128715 atatacattgaattgaactaaattggtgcatctttatctcaacatatgcttagcttgatccctctt 49128650  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 49129312 - 49129234
Alignment:
Q  28 gaatcctaacaatccttcttaagttcacttgctaaaaaattgatctcactcctctcaaatctcttttgtatgtatgctt 106  Q
    |||||||| ||||  ||||||||||||||||||||||| || ||||||||| | | || ||||||||  ||||||||||    
T  49129312 gaatcctagcaatgtttcttaagttcacttgctaaaaagttcatctcactcatttaaactctcttttacatgtatgctt 49129234  T

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