View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_92 (Length: 348)
Name: NF20633_low_92
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_92 |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 6711381 - 6711043
Alignment:
| Q |
1 |
cttcactattgttgtttctttgcttacttttagtcagatccttaattgctttcttagattttgtgaaaagccaatcaagtgtgttgctagctttgtcaaa |
100 |
Q |
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| T |
6711381 |
cttcactattgttgtttctttgcttactcttagttagatccttaattgctttcttagattttgtgaaaagccaatcaagtgtgttgctagctttgtcaaa |
6711282 |
T |
|
| Q |
101 |
ccctaacatgtcttgaagatcgaagaattttcgagcgatctcaattgaaagcctcactcttcgatctctcaaaccttgagaagtgtaaatcttgctgtgt |
200 |
Q |
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| T |
6711281 |
ccctaacatgtcttgaagatcgaagaactttcgagcgatctcaatcgaaagcctcactcttcgatctctcaaaccttgagaagtgtaaatcttgctgtgt |
6711182 |
T |
|
| Q |
201 |
cggtctttcttcaccggtttctttgcgaggaaacaggaaataccatagtgagaaccaccaccaagagatgaaggatcttgtttaggcattggaatagcaa |
300 |
Q |
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| T |
6711181 |
cggtctttcttcaccggtttctttgcgaggaaacaggaaataccatagtgagaaccaccaccaagagatgaaggatcttgtttaggcattggaatagcaa |
6711082 |
T |
|
| Q |
301 |
tgttattattattgttgttactattattgttattttctt |
339 |
Q |
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| T |
6711081 |
tgttattattattgttgttactattattgttattttctt |
6711043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 6032184 - 6032025
Alignment:
| Q |
64 |
tgaaaagccaatcaagtgtgttgctagctttgtcaaaccctaacatgtcttgaagatcgaagaattttcgagcgatctcaattgaaagcctcactcttcg |
163 |
Q |
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| T |
6032184 |
tgaagagccattcaagtgtgttgcttgctttgtcaaaccctaacatgtcttgaagatcgaagaacttcctcgcgatctcgatggaaagtctcacccttct |
6032085 |
T |
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| Q |
164 |
atctctcaaaccttgagaagtgtaaatcttgctgtgtcggtctttcttcaccggtttctt |
223 |
Q |
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| T |
6032084 |
gtctctcaacccttgagatgtgtgaatcttgctatgcctgtctttcttagccggtttctt |
6032025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 46795341 - 46795417
Alignment:
| Q |
56 |
agattttgtgaaaagccaatcaagtgtgttgctagctttgtcaaaccctaacatgtcttgaagatcgaagaattttc |
132 |
Q |
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| T |
46795341 |
agatttagtgaaaagccactcaagtgtgttacttggtttgtcaaactctaacatatcttgaagatcaaagaactttc |
46795417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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