View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20633_low_96 (Length: 333)
Name: NF20633_low_96
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_96 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 19894547 - 19894230
Alignment:
| Q |
1 |
tgctgaagaaaaaatttgatgaactacgagcaatgaatgtggatgaaaaaactctcaaatatgcattgaaagattatggaattgaaaggttcatcgaatt |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19894547 |
tgctggagaaaaaatttgatgaactacgagcaatgaatgtggatgaaaaaactctcaaatatgcattgaaagattatggaattgaaaggttcatcgaatt |
19894448 |
T |
|
| Q |
101 |
cttaacannnnnnnnnn------acttttgattttatgcaattattacgtatcgatctaacattatttgtgatctcatatgatgaaccaatgcaaaatta |
194 |
Q |
| |
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|||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19894447 |
cttaccattttttttttttttttacttttgattttatgcaattattatgtatcgatctaacattatttgtgatctcatatgatgaaccaatgcaaaatta |
19894348 |
T |
|
| Q |
195 |
gagcaaatttgcatggttggcctaacacatatgtattcacaaaagcaatgggagagatgcttctagttcatcacaaacataaggtaccattgatcattat |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19894347 |
gagcaaatttgcatggttggcctaacacatattcattcacaaaagcaatgggagagatt----tagttcatcacaaacataaggtaccattgatcattat |
19894252 |
T |
|
| Q |
295 |
acgccccacaatggtaactagt |
316 |
Q |
| |
|
||||||||||||| |||||||| |
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|
| T |
19894251 |
acgccccacaatgataactagt |
19894230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 189 - 312
Target Start/End: Original strand, 30890934 - 30891057
Alignment:
| Q |
189 |
aaattagagcaaatttgcatggttggcctaacacatatgtattcacaaaagcaatgggagagatgcttctagttcatcacaaacataaggtaccattgat |
288 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||| |||| ||| |||| ||||||||||| |
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|
| T |
30890934 |
aaattagagcaaatttgcatggttggccaaacacatatgtattcacaaaagcaatgggagaaatgcttgtagtaaatcaaaaagataatgtaccattgat |
30891033 |
T |
|
| Q |
289 |
cattatacgccccacaatggtaac |
312 |
Q |
| |
|
||||||||| |||||||||||||| |
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|
| T |
30891034 |
cattatacgacccacaatggtaac |
30891057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 189 - 312
Target Start/End: Original strand, 30895759 - 30895882
Alignment:
| Q |
189 |
aaattagagcaaatttgcatggttggcctaacacatatgtattcacaaaagcaatgggagagatgcttctagttcatcacaaacataaggtaccattgat |
288 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||| |||| ||| |||| ||||||||||| |
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| T |
30895759 |
aaattagagcaaatttgcatggttggccaaacacatatgtattcacaaaagcaatgggagaaatgcttgtagtaaatcaaaaagataatgtaccattgat |
30895858 |
T |
|
| Q |
289 |
cattatacgccccacaatggtaac |
312 |
Q |
| |
|
||||||||| ||||||||| |||| |
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|
| T |
30895859 |
cattatacgacccacaatgataac |
30895882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 30890712 - 30890808
Alignment:
| Q |
7 |
agaaaaaatttgatgaactacgagcaatgaatgtggatgaaaaaactctcaaatatgcattgaaagattatggaattgaaaggttcatcgaattctt |
103 |
Q |
| |
|
|||||||| | |||||||| ||||||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
30890712 |
agaaaaaaatagatgaacttcgagcaatgaatgccgatgaaagcacaatcaaatatgcattgaaagattatggaattcaaaggttcatcaaattctt |
30890808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 19532264 - 19532582
Alignment:
| Q |
1 |
tgctgaagaaaaaatttgatgaactacgagcaatgaatgtggatgaaaaaactctcaaatatgcattgaaagattatggaattgaaaggttcatcgaatt |
100 |
Q |
| |
|
||||| |||||||||| |||||| |||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||| |||| |
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|
| T |
19532264 |
tgctggagaaaaaattagatgaattacgagcaatgaatgtggatgaaaaaacaatcaagcatgcgttgaaagattatggaattgaaaggttcatcaaatt |
19532363 |
T |
|
| Q |
101 |
cttaacannnnnnnnnna---cttttgattttatgcaattattacgtatcgatctaacattatttgtgatctcatatgatgaaccaatgcaaaattagag |
197 |
Q |
| |
|
|||| || ||||| ||||||| || |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
19532364 |
cttaccatactttttttttagctttttattttatacagttattatgtatcgatctaacattatttatgatctcatatgatgaaccaatgcaaaattagag |
19532463 |
T |
|
| Q |
198 |
caaatttgcatggttggcctaacacatatgtattcacaaaagcaatgggagagatgcttctagttcatcacaaacataaggtaccattgatcattatacg |
297 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||| || ||||||||||||||||| |
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| T |
19532464 |
caaatttgcatggttggccaaacacatatgtattcacaaaagcaatgggagagatgcttttagttcatcataaagataatgttccattgatcattatacg |
19532563 |
T |
|
| Q |
298 |
ccccacaatggtaactagt |
316 |
Q |
| |
|
|| ||||||||||||||| |
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|
| T |
19532564 |
tccaacaatggtaactagt |
19532582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 183 - 316
Target Start/End: Original strand, 19657428 - 19657561
Alignment:
| Q |
183 |
aatgcaaaattagagcaaatttgcatggttggcctaacacatatgtattcacaaaagcaatgggagagatgcttctagttcatcacaaacataaggtacc |
282 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||| ||||||||| |||||||||||||||||| |||| ||||| ||| || | ||||| |
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|
| T |
19657428 |
aatgcaaaattagagcaaatttgcatggctggcctaatacatatacattcacaaaggcaatgggagagatgcttttagtgcatcataaagatgatgtacc |
19657527 |
T |
|
| Q |
283 |
attgatcattatacgccccacaatggtaactagt |
316 |
Q |
| |
|
|||||||||||||||||| || |||||||||||| |
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|
| T |
19657528 |
attgatcattatacgccctacgatggtaactagt |
19657561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 193 - 316
Target Start/End: Original strand, 19875375 - 19875498
Alignment:
| Q |
193 |
tagagcaaatttgcatggttggcctaacacatatgtattcacaaaagcaatgggagagatgcttctagttcatcacaaacataaggtaccattgatcatt |
292 |
Q |
| |
|
||||||||||||| |||||||||| || |||||| ||||||||||||||||| ||||||||| |||||||||| ||| |||| || ||||| |||||| |
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|
| T |
19875375 |
tagagcaaatttgtatggttggccaaatacatatactttcacaaaagcaatgggggagatgcttttagttcatcataaagataatgttccattaatcatt |
19875474 |
T |
|
| Q |
293 |
atacgccccacaatggtaactagt |
316 |
Q |
| |
|
||||| ||||||||| | |||||| |
|
|
| T |
19875475 |
atacgtcccacaatgattactagt |
19875498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 19481143 - 19481192
Alignment:
| Q |
207 |
atggttggcctaacacatatgtattcacaaaagcaatgggagagatgctt |
256 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
19481143 |
atggatggccaaacacatacgtattcacaaaagcaatgggagaaatgctt |
19481192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 19874783 - 19874867
Alignment:
| Q |
11 |
aaaatttgatgaactacgagcaatgaatgtggatgaaaaaactctcaaatatgcattgaaagattatggaattgaaaggttcatc |
95 |
Q |
| |
|
|||||| | |||||| | ||||||||||||||||||||| || | | || |||| |||| ||||||||||| |||||||||||| |
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|
| T |
19874783 |
aaaattagctgaactccaagcaatgaatgtggatgaaaatacaataacatgtgcaatgaaggattatggaatggaaaggttcatc |
19874867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 14223346 - 14223287
Alignment:
| Q |
197 |
gcaaatttgcatggttggcctaacacatatgtattcacaaaagcaatgggagagatgctt |
256 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||| ||||||||||||||||| |||||| |
|
|
| T |
14223346 |
gcaaatttgcatggatggccaaacacctatgtatttacaaaagcaatgggagaaatgctt |
14223287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 14229948 - 14229892
Alignment:
| Q |
200 |
aatttgcatggttggcctaacacatatgtattcacaaaagcaatgggagagatgctt |
256 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| ||||||||||||||||| |||||| |
|
|
| T |
14229948 |
aatttgcatggatggccaaacacctatgtatttacaaaagcaatgggagaaatgctt |
14229892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 36183171 - 36183122
Alignment:
| Q |
207 |
atggttggcctaacacatatgtattcacaaaagcaatgggagagatgctt |
256 |
Q |
| |
|
|||| ||||| ||||||||||| || ||||||||||||||||| |||||| |
|
|
| T |
36183171 |
atggatggccaaacacatatgtgtttacaaaagcaatgggagaaatgctt |
36183122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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