View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20633_low_97 (Length: 333)
Name: NF20633_low_97
Description: NF20633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20633_low_97 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 314
Target Start/End: Complemental strand, 47267600 - 47267302
Alignment:
| Q |
16 |
atgaagtgataagatcgaatgtggtacaatggcgaaggtgaaatggaaccaagagacgaagcacaactatgtctgaagtcctaaagaagaaagattgatg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47267600 |
atgaagtgataagatcgaatgtggtacaatggcgaaggtgaaatggaaccaagagacgaagcacaacaatgtctgaagtcctaaagaagaaagattgatg |
47267501 |
T |
|
| Q |
116 |
aactagggtggtggtatcttcttccttgattgtatttgacgaaaaaatttgttcgtattcatgatggttgcatgtaatgtgtggtgggtctcttgccatt |
215 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47267500 |
aactagggttgtggtatcttcttccttgattgtatttgacgaaaaaatttgttcgtattcatgatggttgcatgtaatgtgtggtgggtctcttgccatt |
47267401 |
T |
|
| Q |
216 |
agaatctccctattccatacaggttgaatggaaggtttatgtgctcctcgagccatttctgcccaggcattcataaatagtttcaaaccagctccatcg |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47267400 |
agaatctccctattccatacaggttgaatggaaggtttatgtgctcctcgagccatttctgcccaggcattcataaatagtttcaaaccagctccatcg |
47267302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 313
Target Start/End: Original strand, 47292648 - 47292945
Alignment:
| Q |
16 |
atgaagtgataagatcgaatgtggtacaatggcgaaggtgaaatggaaccaagagacgaagcacaactatgtctgaagtcctaaagaagaaagattgatg |
115 |
Q |
| |
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|||||| ||||||||| |||||||| || || |||||||||||||||||||||||||||||| || ||||||| |||| ||||||||||||||| |||| |
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| T |
47292648 |
atgaagcgataagatcaaatgtggtgcattgacgaaggtgaaatggaaccaagagacgaagcgcagctatgtcagaagctctaaagaagaaagatcgatg |
47292747 |
T |
|
| Q |
116 |
aactagggtggtggtatcttcttccttgattgtatttgacgaaaaaatttgttcgtattcatgatggttgcatgtaatgtgtggtgggtctcttgccatt |
215 |
Q |
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| T |
47292748 |
aactagagaagcagtatcttcttccttaatggtatttggcgaaaaaatttgtttgtattcaagatggttgcatgtaatgcgtggagggtctcttgccatt |
47292847 |
T |
|
| Q |
216 |
agaatctccctattccatacaggttgaatggaaggtttatgtgctcctcgagccatttctgcccaggcattcataaatagtttcaaaccagctccatc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| ||| || ||||||||||| |||| |
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| T |
47292848 |
agaatctccctattccatacaggttgaatggaaggtcgatgtgctcctcgagccatttctgcccatgcagtcatgaattgtctcaaaccagctgcatc |
47292945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 16 - 314
Target Start/End: Original strand, 47299255 - 47299553
Alignment:
| Q |
16 |
atgaagtgataagatcgaatgtggtacaatggcgaaggtgaaatggaaccaagagacgaagcacaactatgtctgaagtcctaaagaagaaagattgatg |
115 |
Q |
| |
|
|||||| |||||||||||||||||| || || ||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| |
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| T |
47299255 |
atgaagcgataagatcgaatgtggtgcattgacgaaggtgaaatggaaccaagagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatg |
47299354 |
T |
|
| Q |
116 |
aactagggtggtggtatcttcttccttgattgtatttgacgaaaaaatttgttcgtattcatgatggttgcatgtaatgtgtggtgggtctcttgccatt |
215 |
Q |
| |
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||||| | | ||||||| |||||| |||||||||| ||||| |||||||||||||||| |||||||||||||||| |||| ||||||||||||||| |
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| T |
47299355 |
gactagagaagcagtatctttttccttaattgtatttggcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccatt |
47299454 |
T |
|
| Q |
216 |
agaatctccctattccatacaggttgaatggaaggtttatgtgctcctcgagccatttctgcccaggcattcataaatagtttcaaaccagctccatcg |
314 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||| |||||||| ||| || ||||||||||| ||||| |
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| T |
47299455 |
agaatctccctattccacacaggttgaatggaaggtcgatatgctcctcgagccatttctgcccatgcattcatgaattgtctcaaaccagctgcatcg |
47299553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 49 - 313
Target Start/End: Complemental strand, 47242659 - 47242392
Alignment:
| Q |
49 |
gaaggtgaaatggaaccaagagacgaagcacaactatgtctgaagtcctaaagaagaaagattgatgaactagggtggtggtatcttcttccttgatt-- |
146 |
Q |
| |
|
||||||||| |||||||||| ||||| |||| |||||| | || | ||||||||||||||||| |||| | | || ||||||||||| ||||| |
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| T |
47242659 |
gaaggtgaattggaaccaagcaacgaatcacagctatgtgagcaggtgtgaagaagaaagattgatggactacgatagtagtatcttcttctttgatgta |
47242560 |
T |
|
| Q |
147 |
-gtatttgacgaaaaaatttgttcgtattcatgatggttgcatgtaatgtgtggtgggtctcttgccattagaatctccctattccatacaggttgaatg |
245 |
Q |
| |
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||||||| ||||| ||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47242559 |
ggtatttggcgaaagtatttgttcgtattcacgatggttgcatgtaatgtatggagggtctcttgccattagaatctccctattccatacaggttgaatg |
47242460 |
T |
|
| Q |
246 |
gaaggtttatgtgctcctcgagccatttctgcccaggcattcataaatagtttcaaaccagctccatc |
313 |
Q |
| |
|
||||||| || |||||||||||||||||||||||| ||| |||| ||| || ||||||||||| |||| |
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| T |
47242459 |
gaaggttgatttgctcctcgagccatttctgcccatgcaatcatgaattgtctcaaaccagctgcatc |
47242392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 99 - 280
Target Start/End: Complemental strand, 47256737 - 47256553
Alignment:
| Q |
99 |
aagaagaaagattgatgaactagggtggtggtatcttcttccttgatt---gtatttgacgaaaaaatttgttcgtattcatgatggttgcatgtaatgt |
195 |
Q |
| |
|
||||||||||||||||| |||| | || ||||||||||||||||| ||||||| || || |||||||| |||||| |||||||||| ||||||| |
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| T |
47256737 |
aagaagaaagattgatggactacaatagtagtatcttcttccttgatgtacgtatttggcggaagtatttgttcatattcacgatggttgcaagtaatgt |
47256638 |
T |
|
| Q |
196 |
gtggtgggtctcttgccattagaatctccctattccatacaggttgaatggaaggtttatgtgctcctcgagccatttctgccca |
280 |
Q |
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|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||| |
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| T |
47256637 |
atggagggtctcttgccattagaatctccctattccatacaggttgaatggaaggttgatttgctcctcgagctatttctgccca |
47256553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 131 - 304
Target Start/End: Complemental strand, 47278854 - 47278681
Alignment:
| Q |
131 |
atcttcttccttgattgtatttgacgaaaaaatttgttcgtattcatgatggttgcatgtaatgtgtggtgggtctcttgccattagaatctccctattc |
230 |
Q |
| |
|
||||||||||||| | |||||||||||| |||||||||||||||||||||||||| |||| |||| ||||||||||||||||| ||||| || | |
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|
| T |
47278854 |
atcttcttccttgttgatatttgacgaaagtatttgttcgtattcatgatggttgcaagtaacacgtggagggtctcttgccattaggatctctctgcgc |
47278755 |
T |
|
| Q |
231 |
catacaggttgaatggaaggtttatgtgctcctcgagccatttctgcccaggcattcataaatagtttcaaacc |
304 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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|
| T |
47278754 |
cataccggttgaatggaaggttgatgtgctcctcgagccatttctgcccaaacattcataaattgtttcaaacc |
47278681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 97 - 304
Target Start/End: Complemental strand, 47283484 - 47283274
Alignment:
| Q |
97 |
taaagaagaaagattgatgaactagggtggtggta---tcttcttccttgattgtatttgacgaaaaaatttgttcgtattcatgatggttgcatgtaat |
193 |
Q |
| |
|
||||||||||||||||||| |||| ||| || | | |||||||||||| | ||||||||| || |||||||| |||||| |||||||||| ||||| |
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|
| T |
47283484 |
taaagaagaaagattgatggactatggtagtagcagcatcttcttccttgttgatatttgacgtaagtatttgttcatattcacgatggttgcaagtaat |
47283385 |
T |
|
| Q |
194 |
gtgtggtgggtctcttgccattagaatctccctattccatacaggttgaatggaaggtttatgtgctcctcgagccatttctgcccaggcattcataaat |
293 |
Q |
| |
|
| |||| |||||||| |||||||| ||||| || |||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||| |
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| T |
47283384 |
gcgtggagggtctctagccattaggatctctctgcgccatactggttgaatggaaggttgatgtgctcctcgagccatttctgcccagacattcatgaat |
47283285 |
T |
|
| Q |
294 |
agtttcaaacc |
304 |
Q |
| |
|
|||||||||| |
|
|
| T |
47283284 |
tgtttcaaacc |
47283274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 22 - 313
Target Start/End: Complemental strand, 32731357 - 32731063
Alignment:
| Q |
22 |
tgataagatcgaatgtggtacaatggcgaaggtgaaatggaaccaagagacgaagcacaactatgtctgaagtcctaaagaagaaagattgatgaactag |
121 |
Q |
| |
|
|||||||||| ||||| || ||||| ||||||||| |||||||||| ||||| | || |||||| | || | ||||||||||||||||| |||| |
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| T |
32731357 |
tgataagatcaaatgtagtgcaatgatgaaggtgaattggaaccaagcaacgaatcgcagctatgtgagcaggtgtgaagaagaaagattgatggactac |
32731258 |
T |
|
| Q |
122 |
ggtggtggtatcttcttccttgatt---gtatttgacgaaaaaatttgttcgtattcatgatggttgcatgtaatgtgtggtgggtctcttgccattaga |
218 |
Q |
| |
|
| | || ||||||||||| ||||| ||||||| ||||| ||||||||||||||| |||||||||||||||| ||| |||||||||||||||||| |
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|
| T |
32731257 |
gatagtagtatcttcttctttgatgtaggtatttggcgaaagtatttgttcgtattcacgatggttgcatgtaatacatggagggtctcttgccattaga |
32731158 |
T |
|
| Q |
219 |
atctccctattccatacaggttgaatggaaggtttatgtgctcctcgagccatttctgcccaggcattcataaatagtttcaaaccagctccatc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||| |||| ||| || ||||||||||| |||| |
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|
| T |
32731157 |
atctccctattccatacaggttgaatggaaggttgatttgctcctcgagccatttctgcccatgcagtcatgaattgtctcaaaccagctgcatc |
32731063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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