View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20634_high_14 (Length: 417)

Name: NF20634_high_14
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20634_high_14
NF20634_high_14
[»] chr1 (9 HSPs)
chr1 (204-327)||(51048029-51048152)
chr1 (262-326)||(32454542-32454606)
chr1 (263-326)||(29232531-29232594)
chr1 (232-326)||(36184636-36184730)
chr1 (34-72)||(51047861-51047899)
chr1 (231-287)||(8261503-8261559)
chr1 (239-290)||(38674292-38674343)
chr1 (258-326)||(14591460-14591526)
chr1 (246-287)||(30196190-30196231)
[»] chr2 (12 HSPs)
chr2 (130-327)||(1775650-1775836)
chr2 (239-326)||(42578451-42578538)
chr2 (230-326)||(725038-725134)
chr2 (239-323)||(38587155-38587239)
chr2 (232-326)||(41321926-41322020)
chr2 (232-325)||(3462680-3462773)
chr2 (246-326)||(11738624-11738704)
chr2 (239-323)||(13863213-13863297)
chr2 (246-326)||(28634506-28634586)
chr2 (37-72)||(1775894-1775929)
chr2 (231-294)||(6364608-6364671)
chr2 (267-311)||(6762667-6762711)
[»] chr6 (5 HSPs)
chr6 (224-326)||(10365025-10365127)
chr6 (239-326)||(32818808-32818895)
chr6 (259-325)||(17772857-17772923)
chr6 (268-326)||(13887155-13887213)
chr6 (246-326)||(5045498-5045578)
[»] chr8 (20 HSPs)
chr8 (239-326)||(38783622-38783709)
chr8 (239-311)||(6295397-6295469)
chr8 (232-326)||(37513235-37513329)
chr8 (246-323)||(9636181-9636258)
chr8 (261-326)||(27756992-27757057)
chr8 (246-326)||(28860443-28860523)
chr8 (258-326)||(31666246-31666314)
chr8 (259-326)||(19439050-19439117)
chr8 (259-326)||(19575199-19575266)
chr8 (246-287)||(9579281-9579322)
chr8 (233-326)||(25980714-25980807)
chr8 (246-287)||(43325566-43325607)
chr8 (240-288)||(10405773-10405821)
chr8 (259-326)||(3955297-3955364)
chr8 (259-322)||(15358641-15358704)
chr8 (233-292)||(16047256-16047315)
chr8 (232-322)||(30265958-30266048)
chr8 (246-279)||(31289160-31289193)
chr8 (230-326)||(43638367-43638463)
chr8 (246-326)||(2116481-2116561)
[»] scaffold0031 (2 HSPs)
scaffold0031 (232-326)||(105598-105692)
scaffold0031 (232-326)||(1570-1664)
[»] chr5 (14 HSPs)
chr5 (239-326)||(233503-233590)
chr5 (239-326)||(33656745-33656832)
chr5 (239-326)||(1156947-1157034)
chr5 (231-294)||(7440948-7441011)
chr5 (236-326)||(8223898-8223988)
chr5 (232-326)||(13760978-13761072)
chr5 (239-325)||(12464196-12464282)
chr5 (231-325)||(16363859-16363953)
chr5 (232-281)||(26077972-26078021)
chr5 (267-326)||(18515717-18515776)
chr5 (258-313)||(19962572-19962627)
chr5 (263-326)||(2683768-2683831)
chr5 (246-326)||(24905382-24905460)
chr5 (239-323)||(17888247-17888331)
[»] chr7 (12 HSPs)
chr7 (230-326)||(11202443-11202539)
chr7 (233-326)||(11749227-11749320)
chr7 (234-326)||(20383798-20383890)
chr7 (238-326)||(40091091-40091179)
chr7 (230-292)||(37545509-37545570)
chr7 (239-326)||(22643943-22644030)
chr7 (230-292)||(33989674-33989736)
chr7 (264-326)||(34996737-34996799)
chr7 (259-326)||(18534271-18534338)
chr7 (280-326)||(38478800-38478846)
chr7 (239-296)||(19933605-19933662)
chr7 (239-296)||(19964744-19964801)
[»] chr3 (15 HSPs)
chr3 (232-326)||(44247589-44247683)
chr3 (234-326)||(20497295-20497387)
chr3 (246-322)||(18370971-18371047)
chr3 (232-296)||(31880788-31880852)
chr3 (232-287)||(39692510-39692565)
chr3 (239-321)||(45059234-45059316)
chr3 (265-326)||(13848872-13848933)
chr3 (240-290)||(37324900-37324950)
chr3 (260-326)||(41044834-41044900)
chr3 (238-326)||(46204233-46204325)
chr3 (269-326)||(29109321-29109378)
chr3 (264-312)||(15200008-15200056)
chr3 (231-302)||(31814725-31814796)
chr3 (246-326)||(39128146-39128226)
chr3 (258-326)||(45339380-45339448)
[»] chr4 (14 HSPs)
chr4 (239-326)||(39121215-39121301)
chr4 (232-326)||(53062155-53062249)
chr4 (232-325)||(52399232-52399325)
chr4 (259-326)||(50135782-50135849)
chr4 (239-326)||(53921105-53921192)
chr4 (246-326)||(11671792-11671872)
chr4 (259-326)||(40547615-40547682)
chr4 (224-326)||(44109927-44110029)
chr4 (258-326)||(56052621-56052689)
chr4 (234-325)||(35106132-35106223)
chr4 (239-326)||(51075042-51075129)
chr4 (265-326)||(33633151-33633212)
chr4 (258-290)||(52457488-52457520)
chr4 (231-294)||(55590802-55590868)
[»] scaffold0091 (1 HSPs)
scaffold0091 (246-326)||(15459-15539)
[»] scaffold0072 (1 HSPs)
scaffold0072 (246-326)||(46598-46678)


Alignment Details
Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 204 - 327
Target Start/End: Original strand, 51048029 - 51048152
Alignment:
Q  204 tcaaatctagaattaatcatttttgtattcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttat 303  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  51048029 tcaaatctagaattaatcatttttgtactcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttattttat 51048128  T
Q  304 atcaaacaatccatcaaatctacc 327  Q
    | ||||||||||||||||| ||||    
T  51048129 accaaacaatccatcaaatatacc 51048152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 326
Target Start/End: Original strand, 32454542 - 32454606
Alignment:
Q  262 tcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||||||||||||||||||||||||||| ||| | ||||||| ||||||| ||| |||||||||    
T  32454542 tcaacacttctctcttctctatttcttttatctctcttttataacaaacaacccaccaaatctac 32454606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 326
Target Start/End: Original strand, 29232531 - 29232594
Alignment:
Q  263 caacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||| ||||||||||||||||||| ||||||| | ||||| |||||||| ||||||||||||    
T  29232531 caacacctctctcttctctatttcttctctctttctcttataccaaacaattcatcaaatctac 29232594  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 326
Target Start/End: Original strand, 36184636 - 36184730
Alignment:
Q  232 tcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||| |||||||||| |||| | ||| ||| ||||||||||||||||||||| |||  | ||| | || |||||||||| |||||||||||||    
T  36184636 tcaagggtatttttgtattttttgttattatcgacacttctctcttctctatttttttcatttttctcttgtatcaaacaacccatcaaatctac 36184730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 51047861 - 51047899
Alignment:
Q  34 aggagataagaaactaagaaagggaaagatgttcgcttc 72  Q
    |||||||||||||||||||||||||||||||||||||||    
T  51047861 aggagataagaaactaagaaagggaaagatgttcgcttc 51047899  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 8261503 - 8261559
Alignment:
Q  231 ttcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttct 287  Q
    |||||||| ||| ||||||||| | | ||||||||||||||||||||||||||||||    
T  8261503 ttcaaggacattcttgtactttcaaaaataatcaacacttctctcttctctatttct 8261559  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 38674343 - 38674292
Alignment:
Q  239 tatttttgtacttttagatataatcaacacttctctcttctctatttctttt 290  Q
    |||||| ||||||||| | ||||||||||||||| |||||||||||||||||    
T  38674343 tattttggtacttttaaaaataatcaacacttctttcttctctatttctttt 38674292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 14591460 - 14591526
Alignment:
Q  258 ataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||||||||||||||||| |  ||||||||  | | | |||||||||||||||| ||||||||||||    
T  14591460 ataatcaacacttctctcttat--atttctttcatatctcttttatatcaaacaatacatcaaatctac 14591526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 30196190 - 30196231
Alignment:
Q  246 gtacttttagatataatcaacacttctctcttctctatttct 287  Q
    ||||||||| |||||| |||||||| ||||||||||||||||    
T  30196190 gtacttttaaatataaacaacacttatctcttctctatttct 30196231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 130 - 327
Target Start/End: Complemental strand, 1775836 - 1775650
Alignment:
Q  130 gatgaatctaactattttgaaccnnnnnnncttaatttaattatttaagctattcaaaattnnnnnnnnnnnnntcaaatctagaattaatcatttttgt 229  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||| |||             |||||||||||||||||||||||| |    
T  1775836 gatgaatctaactattttgaaccaaaaaaacttaatttaattatttaagctattcaacatttaaaaaaaaaa--tcaaatctagaattaatcattttt-t 1775740  T
Q  230 attcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctacc 327  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||| ||||||| |||| |||||||||||||||||    
T  1775739 attcaaggatatttttgtacttttagatataatcaacactt-------ctctatttcttttctctttattttataccaaa-aatccatcaaatctacc 1775650  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 239 - 326
Target Start/End: Original strand, 42578451 - 42578538
Alignment:
Q  239 tatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| | ||||| |||||||||| ||||| ||||    
T  42578451 tatttttgtacttttagatataatcaaaacttctctcttctctatttcttttatctttctcttataccaaacaatccctcaaagctac 42578538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 230 - 326
Target Start/End: Original strand, 725038 - 725134
Alignment:
Q  230 attcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||||| |||||||||||||||  ||||||| |||| ||||||||| | |||||||| ||||||| | || || |||||||||||||||||||||    
T  725038 attcaagggtatttttgtacttttcaatataataaacatttctctcttatttatttcttatctctttctcttctaccaaacaatccatcaaatctac 725134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 38587239 - 38587155
Alignment:
Q  239 tatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatc 323  Q
    |||||||||||||||| | ||||||||||||||||||||||| ||||||  ||||||| ||||||| |||||| | |||||||||    
T  38587239 tatttttgtacttttaaaaataatcaacacttctctcttctcaatttctcatctctttcttttataccaaacactacatcaaatc 38587155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 326
Target Start/End: Original strand, 41321926 - 41322020
Alignment:
Q  232 tcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||| ||||||||||||||| |||  |||||| | || ||||||||||||||||||| ||||| | || |||||||||| |||||||||||||    
T  41321926 tcaagggtatttttgtactttttgattcaatcaaaatttttctcttctctatttcttttatctttctcttgtatcaaacaacccatcaaatctac 41322020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 232 - 325
Target Start/End: Complemental strand, 3462773 - 3462680
Alignment:
Q  232 tcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatcta 325  Q
    |||||| ||||||||||||||||   | |||||||||||||||||||| ||||||| |||||||| | ||||| |||||| | |||||||||||    
T  3462773 tcaaggttatttttgtacttttattaacaatcaacacttctctcttctttatttctcttctctttctcttataccaaacactacatcaaatcta 3462680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 326
Target Start/End: Complemental strand, 11738704 - 11738624
Alignment:
Q  246 gtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||||||| |||||| ||||||||||||||||||||||||| |  | | | ||||||| |||||||||||||||||||||    
T  11738704 gtacttttaaatataaacaacacttctctcttctctatttctctcatttctcttttataccaaacaatccatcaaatctac 11738624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 13863297 - 13863213
Alignment:
Q  239 tatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatc 323  Q
    |||||||||||||||| | ||||||||||||||||||||||| |||| |  ||||||| ||||||| |||||| | |||||||||    
T  13863297 tatttttgtacttttaaaaataatcaacacttctctcttctcaatttttcatctctttcttttataccaaacactacatcaaatc 13863213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 326
Target Start/End: Complemental strand, 28634586 - 28634506
Alignment:
Q  246 gtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||||||||||||||||||||||||||||  |||||||||| | ||| | | ||||| |||||||| ||  ||||||||    
T  28634586 gtacttttagatataatcaacacttctctctcttctatttcttatatctctctcttataccaaacaatacactaaatctac 28634506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 1775929 - 1775894
Alignment:
Q  37 agataagaaactaagaaagggaaagatgttcgcttc 72  Q
    ||||||||||||||||||||||||||||||||||||    
T  1775929 agataagaaactaagaaagggaaagatgttcgcttc 1775894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 6364608 - 6364671
Alignment:
Q  231 ttcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctct 294  Q
    |||||||| ||| ||||||||| | | |||||||||||||||||||||| ||||||| ||||||    
T  6364608 ttcaaggacattcttgtactttaaaaaataatcaacacttctctcttctttatttctcttctct 6364671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 6762711 - 6762667
Alignment:
Q  267 acttctctcttctctatttcttttctctttgttttatatcaaaca 311  Q
    ||||||||||| ||||||||| |||||||| ||||||||||||||    
T  6762711 acttctctcttttctatttctcttctctttcttttatatcaaaca 6762667  T

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Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 224 - 326
Target Start/End: Complemental strand, 10365127 - 10365025
Alignment:
Q  224 ttttgtattcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatc 323  Q
    |||| ||| ||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||    
T  10365127 ttttttatccaagggtatttttgtacttttatgtataatcaacacttctctcttctctatttcttttctctttctcttataccaaacaatccatcaaatc 10365028  T
Q  324 tac 326  Q
    |||    
T  10365027 tac 10365025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 239 - 326
Target Start/End: Complemental strand, 32818895 - 32818808
Alignment:
Q  239 tatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||||||||||||| || || |||||||||||||||||||| ||||||||||| | | | ||||| |||||||||||| ||||||||    
T  32818895 tatttttgtactttttgacatcatcaacacttctctcttctcaatttcttttctatctctcttataccaaacaatccattaaatctac 32818808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 17772857 - 17772923
Alignment:
Q  259 taatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatcta 325  Q
    |||||||||||||| ||||||||||||||| | ||||| |||| || |||||||||||| |||||||    
T  17772857 taatcaacacttctttcttctctatttcttctatctttcttttctaccaaacaatccattaaatcta 17772923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 326
Target Start/End: Original strand, 13887155 - 13887213
Alignment:
Q  268 cttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||| ||||||||||||||| | ||||| | || || |||||||||||||||||||||    
T  13887155 cttctttcttctctatttcttctatctttctcttctaacaaacaatccatcaaatctac 13887213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 326
Target Start/End: Complemental strand, 5045578 - 5045498
Alignment:
Q  246 gtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||||||| | ||||||||||||||| |||  ||||||||| |  ||| | | ||||| |||||||||||| ||||||||    
T  5045578 gtacttttataaataatcaacacttctttctcttctatttctctcatctctctcttataacaaacaatccataaaatctac 5045498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 239 - 326
Target Start/End: Original strand, 38783622 - 38783709
Alignment:
Q  239 tatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |||||||| ||||||||||||    
T  38783622 tatttttgtacttttagatataatcaacacttctctcttctctatttcttttgtctttctcttataccaaacaattcatcaaatctac 38783709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 239 - 311
Target Start/End: Complemental strand, 6295469 - 6295397
Alignment:
Q  239 tatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaaca 311  Q
    |||||||||||||||| | ||||||||||||||||||||||| ||||||| ||||||| ||||||| ||||||    
T  6295469 tatttttgtacttttaaaaataatcaacacttctctcttctcaatttcttatctctttcttttataccaaaca 6295397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 232 - 326
Target Start/End: Original strand, 37513235 - 37513329
Alignment:
Q  232 tcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||||| ||||||||||||| | | |||||||||||||||||||||||||||||| ||| || |   ||||| |||||||| | ||||||||||    
T  37513235 tcaaggacatttttgtactttcaaaaataatcaacacttctctcttctctatttctcttccctctcacttataccaaacaatacctcaaatctac 37513329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 323
Target Start/End: Original strand, 9636181 - 9636258
Alignment:
Q  246 gtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatc 323  Q
    ||||||||| | |||| |||||||||||||||||||||||||| | ||||| | ||||| |||||| |||||||||||    
T  9636181 gtacttttaaaaataaacaacacttctctcttctctatttcttctatctttctcttataccaaacattccatcaaatc 9636258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 27757057 - 27756992
Alignment:
Q  261 atcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||||| ||||||||||||||||||| | |||||| | ||||| |||||||| ||||||||||||    
T  27757057 atcaacatttctctcttctctatttctgtcctctttatcttataccaaacaattcatcaaatctac 27756992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 326
Target Start/End: Complemental strand, 28860523 - 28860443
Alignment:
Q  246 gtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||||||| |||||| || ||||||||| |||||||||||| |  | | | ||||||| |||||||||||||||||||||    
T  28860523 gtacttttaaatataaacatcacttctcttttctctatttctctaatttctcttttataccaaacaatccatcaaatctac 28860443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 31666314 - 31666246
Alignment:
Q  258 ataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||||||||||||||||  ||||||||| |  ||||| ||||||| |||||||| ||||||||||||    
T  31666314 ataatcaacacttctctctcttctatttctctcatctttcttttataccaaacaatacatcaaatctac 31666246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 19439117 - 19439050
Alignment:
Q  259 taatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||||||||||| ||||||||||||||| | | ||| | || || |||||||||||||||||||||    
T  19439117 taatcaacacttctttcttctctatttcttctatatttctcttctaacaaacaatccatcaaatctac 19439050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 19575266 - 19575199
Alignment:
Q  259 taatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||||||||||| ||||||||||||||| | | ||| | || || |||||||||||||||||||||    
T  19575266 taatcaacacttctttcttctctatttcttctatatttctcttctaacaaacaatccatcaaatctac 19575199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 9579281 - 9579322
Alignment:
Q  246 gtacttttagatataatcaacacttctctcttctctatttct 287  Q
    ||||||||| |||||| |||||||||||||||||||||||||    
T  9579281 gtacttttaaatataaacaacacttctctcttctctatttct 9579322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 326
Target Start/End: Original strand, 25980714 - 25980807
Alignment:
Q  233 caaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||| |||||| ||||| | | | ||||| ||||||||| ||||||||||||||||  ||||| | ||||| |||||||| ||| ||||||||    
T  25980714 caagggtattttggtactataaaaaataattaacacttctttcttctctatttctttcatctttctcttataccaaacaatacataaaatctac 25980807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 43325607 - 43325566
Alignment:
Q  246 gtacttttagatataatcaacacttctctcttctctatttct 287  Q
    ||||||||| |||||| |||||||||||||||||||||||||    
T  43325607 gtacttttaaatataaacaacacttctctcttctctatttct 43325566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 10405821 - 10405773
Alignment:
Q  240 atttttgtacttttagatataatcaacacttctctcttctctatttctt 288  Q
    ||||| |||||| || | |||||||||||||||||||||||||||||||    
T  10405821 attttggtacttctaaaaataatcaacacttctctcttctctatttctt 10405773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 3955364 - 3955297
Alignment:
Q  259 taatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||||||||| | ||||||||||||||| | | ||| | || || |||||||||||||||||||||    
T  3955364 taatcaacacttatttcttctctatttcttctatatttctcttctaacaaacaatccatcaaatctac 3955297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 15358641 - 15358704
Alignment:
Q  259 taatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaat 322  Q
    |||||||||||||| ||||||||||||||| | | ||| | || || |||||||||||||||||    
T  15358641 taatcaacacttctttcttctctatttcttctatatttctcttctaacaaacaatccatcaaat 15358704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 16047256 - 16047315
Alignment:
Q  233 caaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttct 292  Q
    |||||| ||| ||||||||| | | |||||||||| |||||||||||||| |||||||||    
T  16047256 caaggacattcttgtactttaaaaaataatcaacatttctctcttctctacttcttttct 16047315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 322
Target Start/End: Original strand, 30265958 - 30266048
Alignment:
Q  232 tcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaat 322  Q
    |||||| ||||||||||| ||||   |  ||||| ||||||||||||| ||||||| |||||||| | ||||| |||||| | ||||||||    
T  30265958 tcaaggttatttttgtacatttattaacgatcaatacttctctcttctttatttctcttctctttctcttataccaaacactacatcaaat 30266048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 279
Target Start/End: Original strand, 31289160 - 31289193
Alignment:
Q  246 gtacttttagatataatcaacacttctctcttct 279  Q
    ||||||||||||||||||||||||||||| ||||    
T  31289160 gtacttttagatataatcaacacttctcttttct 31289193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 326
Target Start/End: Original strand, 43638367 - 43638463
Alignment:
Q  230 attcaaggatatttttgtacttttaga-tataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||||||||||||||||  ||||||| |||||| ||||  || ||||  ||||||||| || ||||| | ||||| |||||||| ||||||||||||    
T  43638367 attcaaggatatttttgtctttttagaatataat-aacatctcactctcttctatttctcttttctttctcttataccaaacaatacatcaaatctac 43638463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 326
Target Start/End: Original strand, 2116481 - 2116561
Alignment:
Q  246 gtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||||||| | |||||||||||||||||||  ||||||||| |  ||| | | ||||| |||||||  ||||||||||||    
T  2116481 gtacttttataaataatcaacacttctctctcttctatttctctcatctctctcttataacaaacaacacatcaaatctac 2116561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 232 - 326
Target Start/End: Complemental strand, 105692 - 105598
Alignment:
Q  232 tcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||| || ||||||||||||||||||| | |||||||||||||||| |||||||||||||||||| ||||| | |||||||||||||||||||    
T  105692 tcaagggtagttttgtacttttagatatagttaacacttctctcttctttatttcttttctctttgtcttataccgaacaatccatcaaatctac 105598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 326
Target Start/End: Complemental strand, 1664 - 1570
Alignment:
Q  232 tcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||| ||||||||||||||| |||  ||| || |||||||||||||||||||||||| ||||| | || |||||||||| |||||||||||||    
T  1664 tcaagggtatttttgtactttttgattcaattaaaacttctctcttctctatttcttttatctttctcttgtatcaaacaacccatcaaatctac 1570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 239 - 326
Target Start/End: Complemental strand, 233590 - 233503
Alignment:
Q  239 tatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||| | ||||| |||||||||| ||||||||||    
T  233590 tatttttgtacttttagatataatcaaaatttctctcttctctatttcttttatctttctcttataccaaacaatccctcaaatctac 233503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 239 - 326
Target Start/End: Complemental strand, 33656832 - 33656745
Alignment:
Q  239 tatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| | ||||| |||||| | | ||||||||||    
T  33656832 tatttttgtacttttagatataatcaaaacttatctcttctctatttcttttatctttctcttataccaaacagttcttcaaatctac 33656745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 239 - 326
Target Start/End: Original strand, 1156947 - 1157034
Alignment:
Q  239 tatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||| ||| ||||| | |||| |||||||||||||||||||||||||| ||||||| | ||||| ||||| || ||||||||||||    
T  1156947 tattttagtatttttaaaaataaccaacacttctctcttctctatttcttctctctttctcttataccaaactatacatcaaatctac 1157034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 7440948 - 7441011
Alignment:
Q  231 ttcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctct 294  Q
    |||||||||||||||||||||||| | ||||| |||| ||||||||||||||||||| ||||||    
T  7440948 ttcaaggatatttttgtacttttaaaaataattaacaattctctcttctctatttctcttctct 7441011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 326
Target Start/End: Complemental strand, 8223988 - 8223898
Alignment:
Q  236 ggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||||| | ||||||||| |||||| ||| ||||||||||||||||||||| |  | | | ||||||||||| |||||||||||||||||    
T  8223988 ggatattatagtacttttaaatataaacaatacttctctcttctctatttctctcatttctcttttatatcaagcaatccatcaaatctac 8223898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 232 - 326
Target Start/End: Complemental strand, 13761072 - 13760978
Alignment:
Q  232 tcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||| || |||| |||||||  |||||||||||| ||||||| | ||||||||| |||||||| | || || |||||||||||||||||||||    
T  13761072 tcaagggtaattttatacttttcaatataatcaacatttctctcctttctatttctcttctctttctcttgtaccaaacaatccatcaaatctac 13760978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 325
Target Start/End: Original strand, 12464196 - 12464282
Alignment:
Q  239 tatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatcta 325  Q
    |||||| ||| ||||| | |||||||||||||||||||| ||||||||| |||||| | ||||| | |||||||  |||||||||||    
T  12464196 tattttagtatttttaaacataatcaacacttctctcttttctatttctcttctctctcttttaaaccaaacaacacatcaaatcta 12464282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 231 - 325
Target Start/End: Original strand, 16363859 - 16363953
Alignment:
Q  231 ttcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatcta 325  Q
    ||||||| |||||||||| |||| |||||||| || | || |||||||||||||| || | ||||| |||||||||||||||  | |||||||||    
T  16363859 ttcaagggtatttttgtattttttgatataattaaaatttttctcttctctattttttctatctttcttttatatcaaacaactcctcaaatcta 16363953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 26077972 - 26078021
Alignment:
Q  232 tcaaggatatttttgtacttttagatataatcaacacttctctcttctct 281  Q
    |||||| ||||||||||||||||||||||||||| |||||||| ||||||    
T  26077972 tcaagggtatttttgtacttttagatataatcaaaacttctcttttctct 26078021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 326
Target Start/End: Complemental strand, 18515776 - 18515717
Alignment:
Q  267 acttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||||||||| ||||||||| |||||||| ||||||| |||||||| ||| ||||||||    
T  18515776 acttctctcttttctatttctcttctctttcttttataccaaacaatacattaaatctac 18515717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 313
Target Start/End: Complemental strand, 19962627 - 19962572
Alignment:
Q  258 ataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaat 313  Q
    |||||||||||||||||||||||||||||||| || ||| ||| ||| ||||||||    
T  19962627 ataatcaacacttctctcttctctatttctttcctatttttttcataccaaacaat 19962572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 326
Target Start/End: Complemental strand, 2683831 - 2683768
Alignment:
Q  263 caacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||||||||||||| ||||||||| |||||||| | || || | ||||||| |||||||||||    
T  2683831 caacacttctctcttttctatttctcttctctttatcttctaccgaacaatctatcaaatctac 2683768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 326
Target Start/End: Original strand, 24905382 - 24905460
Alignment:
Q  246 gtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||||||| |||||||||||||||||||||| | | | ||| |||||| | |||  || |||||||| ||||||||||||    
T  24905382 gtacttttatatataatcaacacttctctcttttatttctctcttctctctcttt--taccaaacaatacatcaaatctac 24905460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 17888247 - 17888331
Alignment:
Q  239 tatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatc 323  Q
    |||||| |||| |||  |||||||||||| |||| |||||||||| |||| | ||||| | ||||| ||||||| | ||||||||    
T  17888247 tattttggtacatttcaatataatcaacatttctttcttctctatctcttctttctttctcttataccaaacaacctatcaaatc 17888331  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 230 - 326
Target Start/End: Complemental strand, 11202539 - 11202443
Alignment:
Q  230 attcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||||| |||||||||||||||  ||||||| |||| |||||||||||||||||||| ||||||| | || || |||||||||||||||||||||    
T  11202539 attcaagggtatttttgtacttttcaatataattaacatttctctcttctctatttcttatctctttctcttctaccaaacaatccatcaaatctac 11202443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 233 - 326
Target Start/End: Complemental strand, 11749320 - 11749227
Alignment:
Q  233 caaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||| ||||||| |||||||  |||||||||||| |||||||||||||||||||| ||||||| | || || |||||||||||||||||||||    
T  11749320 caagggtatttttatacttttcaatataatcaacatttctctcttctctatttcttatctctttctcttctaccaaacaatccatcaaatctac 11749227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 326
Target Start/End: Original strand, 20383798 - 20383890
Alignment:
Q  234 aaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||| ||| ||||||||||||   ||||||||||||||||||||||| ||||||||||||| | | ||||| ||||||| | |||||||||||    
T  20383798 aagggtatatttgtacttttaacaataatcaacacttctctcttctcaatttcttttctctatctcttataccaaacaacctatcaaatctac 20383890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 326
Target Start/End: Complemental strand, 40091179 - 40091091
Alignment:
Q  238 atatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||||||||||||| ||||||||||| |||||||||||| ||||||||||| || || | |  |||||||||| || ||||||||||    
T  40091179 atatttttgtactttttgatataatcaaaacttctctcttcactatttcttttatccttctctcctatcaaacaacccttcaaatctac 40091091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 292
Target Start/End: Complemental strand, 37545570 - 37545509
Alignment:
Q  230 attcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttct 292  Q
    ||||||||||||||||||||||||| | | |||||||||||||||||||||| ||||| ||||    
T  37545570 attcaaggatatttttgtacttttaaa-acaatcaacacttctctcttctctgtttctcttct 37545509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 326
Target Start/End: Complemental strand, 22644030 - 22643943
Alignment:
Q  239 tatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||| |||||| || | ||||||||||||||| ||||||||||||||||| | | | | || || |||||||| ||||||||||||    
T  22644030 tattttggtacttctaaaaataatcaacacttctttcttctctatttcttttatatctctcttctaccaaacaatacatcaaatctac 22643943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 33989674 - 33989736
Alignment:
Q  230 attcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttct 292  Q
    |||||||| |||||||||||||||  |||||||||||| ||||||||| ||| ||||| ||||    
T  33989674 attcaagggtatttttgtacttttcaatataatcaacatttctctcttatctctttctcttct 33989736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 326
Target Start/End: Original strand, 34996737 - 34996799
Alignment:
Q  264 aacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||||||||||||||||||||| |||| | | | ||||| |||||||| ||||||||||||    
T  34996737 aacacttctctcttctctatttctcttctttctctcttataccaaacaatacatcaaatctac 34996799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 18534338 - 18534271
Alignment:
Q  259 taatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||||||||||| ||||||||||||||| | | ||| | || || |||||||||||| ||||||||    
T  18534338 taatcaacacttctttcttctctatttcttctatatttctcttctaacaaacaatccattaaatctac 18534271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 326
Target Start/End: Complemental strand, 38478846 - 38478800
Alignment:
Q  280 ctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||||||||||||||| ||||||| |||||||| ||| ||||||||    
T  38478846 ctatttcttttctctttcttttataccaaacaatacattaaatctac 38478800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 296
Target Start/End: Complemental strand, 19933662 - 19933605
Alignment:
Q  239 tatttttgtacttttagatataatcaacacttctctcttctctatttcttttctcttt 296  Q
    |||||| ||||||||| | ||||| |||| |||||| ||||||||||||| |||||||    
T  19933662 tattttagtacttttaaaaataataaacaattctcttttctctatttcttctctcttt 19933605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 296
Target Start/End: Complemental strand, 19964801 - 19964744
Alignment:
Q  239 tatttttgtacttttagatataatcaacacttctctcttctctatttcttttctcttt 296  Q
    |||||| ||||||||| | ||||| |||| |||||| ||||||||||||| |||||||    
T  19964801 tattttagtacttttaaaaataataaacaattctcttttctctatttcttctctcttt 19964744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 232 - 326
Target Start/End: Original strand, 44247589 - 44247683
Alignment:
Q  232 tcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||| ||||||||||||||| |||  |||||| |||||||||||||||||||||||| ||||| | || ||||||||||||| ||||||||||    
T  44247589 tcaagggtatttttgtactttttgattcaatcaaaacttctctcttctctatttcttttatctttctcttctatcaaacaatccctcaaatctac 44247683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 234 - 326
Target Start/End: Original strand, 20497295 - 20497387
Alignment:
Q  234 aaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||| |||||||||||||||  ||||||||||| ||||||||||||||||||||||  | | | |||||||||||| ||||||||||||||||    
T  20497295 aagggtatttttgtacttttcaatataatcaactcttctctcttctctatttctttcatttctcttttatatcaaataatccatcaaatctac 20497387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 18370971 - 18371047
Alignment:
Q  246 gtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaat 322  Q
    ||||||||| | |||| |||||||||||||||||||||||||| | ||||| | ||||| |||||||||||||||||    
T  18370971 gtacttttaaaaataaacaacacttctctcttctctatttcttctatctttctcttataccaaacaatccatcaaat 18371047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 31880852 - 31880788
Alignment:
Q  232 tcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctcttt 296  Q
    |||||| |||||| |||||| | ||||| |||||||||||||||||||||||||||||| |||||    
T  31880852 tcaagggtattttcgtacttcttgatattatcaacacttctctcttctctatttcttttatcttt 31880788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 287
Target Start/End: Original strand, 39692510 - 39692565
Alignment:
Q  232 tcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttct 287  Q
    ||||||| ||||||||||||| | | ||||||||||||||||||||||||||||||    
T  39692510 tcaaggacatttttgtactttcaaaaataatcaacacttctctcttctctatttct 39692565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 321
Target Start/End: Original strand, 45059234 - 45059316
Alignment:
Q  239 tatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaa 321  Q
    |||||| |||||| |||| ||||||||||||||||||||| ||||||||| | ||||| | ||||| ||| ||| ||||||||    
T  45059234 tattttggtacttctagaaataatcaacacttctctcttccctatttcttctatctttctcttataccaatcaacccatcaaa 45059316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 326
Target Start/End: Complemental strand, 13848933 - 13848872
Alignment:
Q  265 acacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||||||||||  ||||||||| |||||||||||||| | |||||||| | ||||||||||    
T  13848933 acacttctctctcttctatttctcttctctttgttttaaaccaaacaatacctcaaatctac 13848872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 37324950 - 37324900
Alignment:
Q  240 atttttgtacttttagatataatcaacacttctctcttctctatttctttt 290  Q
    ||||||||||||||| | |||||||||||||||||||  ||||||| ||||    
T  37324950 atttttgtacttttaaaaataatcaacacttctctctcttctatttatttt 37324900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 41044900 - 41044834
Alignment:
Q  260 aatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||| |||||| ||||||||||||||||| ||||| | || || ||||||||| || ||||||||    
T  41044900 aatcaagacttctttcttctctatttcttttatctttctattctaccaaacaatcaattaaatctac 41044834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 326
Target Start/End: Complemental strand, 46204325 - 46204233
Alignment:
Q  238 atatttttgtacttttagatataatcaacacttctctcttctct--atttcttttctctttgttttatat--caaacaatccatcaaatctac 326  Q
    ||||||||| | ||||  ||||||||||||||||||| || | |  ||||||||||||||| | ||||||  |||||||||||| ||||||||    
T  46204325 atatttttgaaattttttatataatcaacacttctcttttttttttatttcttttctctttttattatatatcaaacaatccattaaatctac 46204233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 326
Target Start/End: Complemental strand, 29109378 - 29109321
Alignment:
Q  269 ttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||||||||||||||||| ||||||| | ||||| ||||||| |  ||||||||||    
T  29109378 ttctctcttctctatttcttctctctttctcttataccaaacaaccactcaaatctac 29109321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 15200008 - 15200056
Alignment:
Q  264 aacacttctctcttctctatttcttttctctttgttttatatcaaacaa 312  Q
    |||| ||||||||||||||||||| |||||||| | | |||||||||||    
T  15200008 aacatttctctcttctctatttctcttctctttatctcatatcaaacaa 15200056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 31814725 - 31814796
Alignment:
Q  231 ttcaaggatatttttgtacttttaga-tataatcaacacttctctcttctctatttcttttctctttgtttta 302  Q
    |||||||| ||| ||||||||||| | | |||||| |||||||||||  |||||||||||||||||| |||||    
T  31814725 ttcaaggacattcttgtacttttaaaatttaatca-cacttctctctcttctatttcttttctctttatttta 31814796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 326
Target Start/End: Complemental strand, 39128226 - 39128146
Alignment:
Q  246 gtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||||||| |||||||||||| ||||||||  ||||||||| |  ||| | | || || |||||||| ||||||||||||    
T  39128226 gtacttttatatataatcaacatttctctctcttctatttctctcatctctctcttttaccaaacaatacatcaaatctac 39128146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 45339380 - 45339448
Alignment:
Q  258 ataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||||||| |||| |||| ||||||||| || ||||| | | ||  |||||||||||||||||||||    
T  45339380 ataatcaacatttctttcttttctatttctcttatctttctctcattccaaacaatccatcaaatctac 45339448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 239 - 326
Target Start/End: Complemental strand, 39121301 - 39121215
Alignment:
Q  239 tatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||||||||||||  | ||||||||||||||||||||| |||||||||||||||||| | ||||| ||||||| |||||||||||||    
T  39121301 tatttttgtactttgtg-tataatcaacacttctctcttttctatttcttttctctttctcttataccaaacaacccatcaaatctac 39121215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 326
Target Start/End: Complemental strand, 53062249 - 53062155
Alignment:
Q  232 tcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||| ||||||||||||||| |||  ||| || |||||||||||||||||||||||| ||||| | || |||||||||| |||||||||||||    
T  53062249 tcaagggtatttttgtactttttgattcaattaaaacttctctcttctctatttcttttatctttctcttgtatcaaacaacccatcaaatctac 53062155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 232 - 325
Target Start/End: Original strand, 52399232 - 52399325
Alignment:
Q  232 tcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatcta 325  Q
    |||||| ||||||||||||||||   | |||||||||||||||||||| ||||||| |||||||| | ||||| |||||| | |||||||||||    
T  52399232 tcaaggttatttttgtacttttattaacaatcaacacttctctcttctttatttctcttctctttctcttataccaaacactacatcaaatcta 52399325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 50135782 - 50135849
Alignment:
Q  259 taatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||||||||||| ||||||||||||||| | ||||| |||| || |||||||||||||||||||||    
T  50135782 taatcaacacttctttcttctctatttcttctatctttcttttctaccaaacaatccatcaaatctac 50135849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 239 - 326
Target Start/End: Original strand, 53921105 - 53921192
Alignment:
Q  239 tatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||| ||| ||||| |||||||||||||||||||||  ||||||||| |||||| | ||||| |||||||||  ||||||||||||    
T  53921105 tattttagtatttttaaatataatcaacacttctctctcttctatttctcttctctctcttttaaatcaaacaacacatcaaatctac 53921192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 326
Target Start/End: Original strand, 11671792 - 11671872
Alignment:
Q  246 gtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||||||| |||||| ||||||||||||||||||||||||| |  | | | ||||||| |||||||| ||||||||||||    
T  11671792 gtacttttaaatataaacaacacttctctcttctctatttctctcatttctcttttataccaaacaattcatcaaatctac 11671872  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 40547615 - 40547682
Alignment:
Q  259 taatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||||||||||| ||||||||||||||| | | ||| | || || |||||||||||||||||||||    
T  40547615 taatcaacacttctttcttctctatttcttctatatttctcttctaacaaacaatccatcaaatctac 40547682  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 326
Target Start/End: Complemental strand, 44110029 - 44109927
Alignment:
Q  224 ttttgtattcaaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatc 323  Q
    |||| ||||||||| |||||||||||||| | | |||||||| |||||| |||  ||||| ||| |  ||||| | |||||||||||||  |||||||||    
T  44110029 ttttttattcaagggtatttttgtactttcaaaaataatcaatacttctttctcttctatctctctcttctttatcttatatcaaacaacacatcaaatc 44109930  T
Q  324 tac 326  Q
    |||    
T  44109929 tac 44109927  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 56052621 - 56052689
Alignment:
Q  258 ataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||||||| |||| |||||||||||| |||| ||||| | ||||  ||||| |||||||||||||||    
T  56052621 ataatcaacatttctttcttctctattttttttatctttctcttattccaaaccatccatcaaatctac 56052689  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 325
Target Start/End: Original strand, 35106132 - 35106223
Alignment:
Q  234 aaggatatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatcta 325  Q
    |||| |||||| ||||||||| | ||||||||||||||| | ||||||||||||| | | | | | || ||||||||| | |||||||||||    
T  35106132 aagggtattttggtacttttaaaaataatcaacacttcttttttctctatttcttctatatctctcttctatcaaacactacatcaaatcta 35106223  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 326
Target Start/End: Original strand, 51075042 - 51075129
Alignment:
Q  239 tatttttgtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||||||||||||  |  |||||||||||||||||| |||||||||| |||  | | |||| || |||||| | ||||||||||||    
T  51075042 tatttttgtacttttgaaagtaatcaacacttctctctcctctatttctcttcaatctcttttctaccaaacagtacatcaaatctac 51075129  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 326
Target Start/End: Complemental strand, 33633212 - 33633151
Alignment:
Q  265 acacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    |||||||| |||||||||||||| |||| | | | ||||| ||||||| |||||||||||||    
T  33633212 acacttctttcttctctatttctcttctttctctcttataccaaacaacccatcaaatctac 33633151  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 52457520 - 52457488
Alignment:
Q  258 ataatcaacacttctctcttctctatttctttt 290  Q
    ||||||||||||||| |||||||||||||||||    
T  52457520 ataatcaacacttctttcttctctatttctttt 52457488  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 55590868 - 55590802
Alignment:
Q  231 ttcaaggatatttttgtacttttagatataatcaacacttct---ctcttctctatttcttttctct 294  Q
    |||||||| ||| ||||||||| | | |||||||||||||||   ||||||||||||||| ||||||    
T  55590868 ttcaaggacattcttgtactttaaaaaataatcaacacttcttctctcttctctatttctcttctct 55590802  T

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Target: scaffold0091 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 326
Target Start/End: Original strand, 15459 - 15539
Alignment:
Q  246 gtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||||||| || ||| ||||||||||||||| ||| ||||| |  | | | |||||||||||||||||||||||||||||    
T  15459 gtacttttaaatctaaacaacacttctctcttttctttttctctcatttctcttttatatcaaacaatccatcaaatctac 15539  T

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Target: scaffold0072 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 326
Target Start/End: Complemental strand, 46678 - 46598
Alignment:
Q  246 gtacttttagatataatcaacacttctctcttctctatttcttttctctttgttttatatcaaacaatccatcaaatctac 326  Q
    ||||||||| | ||||||||||||||| |||  ||||||||| |  ||| | | ||||| |||||||||||| ||||||||    
T  46678 gtacttttataaataatcaacacttctttctcttctatttctctcatctctctcttataacaaacaatccataaaatctac 46598  T

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