View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20634_high_17 (Length: 409)
Name: NF20634_high_17
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20634_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 160 - 393
Target Start/End: Complemental strand, 29810659 - 29810427
Alignment:
| Q |
160 |
agtcgtatccaaatcaagaccaactaatattaggggttcaattacatcatccatttgcagaatccatttaaatccaatccaaagttgtataaagataagt |
259 |
Q |
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| T |
29810659 |
agtcgtatccaaatcaagaccaactaatattaggggttcaattacaccatccatttgcagaacccatttaaatccagtccaaagttgtataaagattagt |
29810560 |
T |
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| Q |
260 |
tcaccgaaaattgaaaccaagaaaattgaatctttcggaaaaacatattccaaagtccataactaacttcactcgaattaccttataatttgattcattt |
359 |
Q |
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| T |
29810559 |
tcaccgaaa-ttgaaaccaagaaaattgaatctatcggaaaaacatattccaaagtccataaccaacttcactcgaattaccttataatttgattcattt |
29810461 |
T |
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| Q |
360 |
aaaagtttagaaactttagattagttcagtatgt |
393 |
Q |
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| T |
29810460 |
aacaatttaaaaactttagattagttcagtatgt |
29810427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 29810808 - 29810960
Alignment:
| Q |
18 |
ctcaaaacaacaaataccattgaagatgtataatgtacgtcttgttgtatatttcgtcacgaaccacatggaaattaatctcagtgtgttgcat-----g |
112 |
Q |
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| T |
29810808 |
ctcaaaacaacaaataccattgaagatgtataatgtacgtcttgttgtat--ttcgtcacgaaccacatggaaattaatctcagtgtgttgcattgcatg |
29810905 |
T |
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| Q |
113 |
ctcgtgaaaaatcgggattgccttcaatatgtgcattgaagatttgtagtcgtat |
167 |
Q |
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| T |
29810906 |
ctcatgaaaaatcgggattgccttcaatatgtgcattgaagatttgtagtcgtat |
29810960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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