View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20634_high_20 (Length: 402)
Name: NF20634_high_20
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20634_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 385
Target Start/End: Original strand, 50223992 - 50224364
Alignment:
| Q |
13 |
ttcttcttccacctttccaatcatccactgnnnnnnnnnnngctttgttgatcctggccctcatggtaacggccgatatatagagcatatgttgcctgaa |
112 |
Q |
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| T |
50223992 |
ttcttcttccacctttccaatcatccactgaaaaaaaaaaagctttgttgatcctggccctcatggtaacggccgatatatagagcatatgttgcctgaa |
50224091 |
T |
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| Q |
113 |
gtagaaatgaaggattttcggaagggttcacaggtatgatttatgtactagaaatttttagtgtgatcttaactaagagaaagtcttcacaaacttgacc |
212 |
Q |
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| T |
50224092 |
gtagaaatgaaggattttcggaagggttcacaggtatgatttatgtactagaaatttttagtgtgatcttaactgagaaaaagtcttgacaaacttgacc |
50224191 |
T |
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| Q |
213 |
acaaatgcatatgggaaaataattattagaatattaatcttacagtgaattttaaatagtgattgttataatatcatcttctgatcatttatctcccctc |
312 |
Q |
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| T |
50224192 |
acaaatgcatatgggaaaataattattagaatattaatcttacagtgaattttaaatagtgattgttataatagcatcttctgatcatttatctcccctc |
50224291 |
T |
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| Q |
313 |
tacattgtgcaaccactcgttgcaatcaagatttggctcacatcatcgtttttgcaatacaaatgtagaaact |
385 |
Q |
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| T |
50224292 |
tacattgtgcaaccactcgttgcaatcaagatttggctcacatcatcgtttttgcaatacgaatgtagaaact |
50224364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 1650802 - 1650754
Alignment:
| Q |
101 |
atgttgcctgaagtagaaatgaaggattttcggaagggttcacaggtat |
149 |
Q |
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| T |
1650802 |
atgttgcctgaagtagaaaagaaggattttcgaaagggttcacaggtat |
1650754 |
T |
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