View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20634_high_29 (Length: 342)

Name: NF20634_high_29
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20634_high_29
NF20634_high_29
[»] chr3 (4 HSPs)
chr3 (1-320)||(1344137-1344440)
chr3 (1-312)||(31136574-31136884)
chr3 (2-312)||(7578360-7578669)
chr3 (2-296)||(9701256-9701549)
[»] chr8 (4 HSPs)
chr8 (1-312)||(14723117-14723427)
chr8 (2-222)||(12218635-12218855)
chr8 (35-312)||(28184413-28184687)
chr8 (239-312)||(19195974-19196047)
[»] chr1 (3 HSPs)
chr1 (12-312)||(48920715-48921014)
chr1 (35-312)||(34428231-34428507)
chr1 (166-312)||(40679060-40679204)
[»] chr6 (1 HSPs)
chr6 (1-312)||(7705551-7705861)
[»] chr4 (4 HSPs)
chr4 (2-312)||(55468669-55468980)
chr4 (92-216)||(9047547-9047671)
chr4 (2-61)||(27189819-27189880)
chr4 (240-312)||(11673521-11673593)
[»] chr7 (2 HSPs)
chr7 (35-312)||(19920944-19921220)
chr7 (138-204)||(10012742-10012808)
[»] chr2 (6 HSPs)
chr2 (146-312)||(33527572-33527736)
chr2 (1-81)||(34661625-34661705)
chr2 (109-162)||(34661701-34661754)
chr2 (1-46)||(18253668-18253713)
chr2 (129-204)||(10194157-10194232)
chr2 (145-216)||(22564637-22564708)
[»] chr5 (1 HSPs)
chr5 (144-216)||(21747419-21747491)
[»] scaffold0664 (1 HSPs)
scaffold0664 (138-204)||(2042-2108)
[»] scaffold0126 (2 HSPs)
scaffold0126 (138-204)||(38881-38947)
scaffold0126 (138-204)||(43856-43922)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 1344440 - 1344137
Alignment:
Q  1 tattgagattgctcacataaatggtttctcaaatttttggttggaaacagactcccaattggtcattttagctttcaaatatgtttctactgttccttgg 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||  ||||||||||    
T  1344440 tattgagattgctcacatcaatggtttctcaaatttttggttggaaacagactcccaattggtcattttagctttcaaatctttttctgttgttccttgg 1344341  T
Q  101 gttttaagaaataggtggctcaattgtctggttaggattagacatatgagttttgtggtgtctcatatctatagagagggcaatgcttgtgctgatagtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1344340 gttttaagaaataggtggctcaattgtctggttaggattagacatatgagttttgtggtgtctcatatctatagagagggcaatgcttgtgctgatagtc 1344241  T
Q  201 ttgctaatgttggtcttgcattaacctcgtctgacttgtttttggtctgatggcttacctgactccattagaggagagtacaatagaaacaggttgagtg 300  Q
                   ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||     
T  1344240 ---------------ttgcattaacctcgtctgacttg-ttttggtctgatggcttacctaactccattagaggagagtacaataggaacaggttgagta 1344157  T
Q  301 tgcccaactttactatcttt 320  Q
    |||| |||||||||||||||    
T  1344156 tgccaaactttactatcttt 1344137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 31136574 - 31136884
Alignment:
Q  1 tattgagattgctcacataaatggtttctcaaatttttggttggaaacagactcccaattggtcattttagctttcaaatatgtttctactgttccttgg 100  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||   |||||||||    
T  31136574 tattgagatagctcacatcaatggtttctcaaatttttggttggaaacagactcccaattggtcattttagctttcaaatctctctctgtggttccttgg 31136673  T
Q  101 gttttaagaaataggtggctcaattgtctggttaggattagacatatgagttttgtggtgtctcatatctatagagagggcaatgcttgtgctgatagtc 200  Q
     ||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||    
T  31136674 attttaagaaataggtggcttaactgtctggtttggattagacatatgagttttgtggtgtctcatatctatagggagggcaatgcttgtgctgacaatc 31136773  T
Q  201 ttgctaatgttggtcttgcattaacctcgtctgacttgtttttggtctgatggcttacctgactccattagaggagagtacaatagaaacaggttgagtg 300  Q
    ||||||||||||||||  | ||||| ||  |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||  ||     
T  31136774 ttgctaatgttggtctaactttaacttctgctgacttg-ttttggtctgatgacttacctgactccattagaggagagtacaataggaacaggttaggta 31136872  T
Q  301 tgcccaacttta 312  Q
    ||||||||||||    
T  31136873 tgcccaacttta 31136884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 2 - 312
Target Start/End: Original strand, 7578360 - 7578669
Alignment:
Q  2 attgagattgctcacataaatggtttctcaaatttttggttggaaacagactcccaattggtcattttagctttcaaatatgtttctactgttccttggg 101  Q
    ||||||||||||||||| ||||||||||  |||||||||||||| ||| |||| |||||||| ||||| |||||||||||| ||||    ||||||||||    
T  7578360 attgagattgctcacattaatggtttctggaatttttggttggagacaaactcacaattggttattttggctttcaaatatatttccttggttccttggg 7578459  T
Q  102 ttttaagaaataggtggctcaattgtctggttaggattagacatatgagttttgtggtgtctcatatctatagagagggcaatgcttgtgctgatagtct 201  Q
    ||||||||||||||||||| |||||  | ||||| || ||||| ||||| ||||||||||||||||| |||| |||||||||||||||||| || ||  |    
T  7578460 ttttaagaaataggtggcttaattgcttagttagaatcagacagatgagatttgtggtgtctcatatatatatagagggcaatgcttgtgcggacagctt 7578559  T
Q  202 tgctaatgttggtcttgcattaacctcgtctgacttgtttttggtctgatggcttacctgactccattagaggagagtacaatagaaacaggttgagtgt 301  Q
    ||||||| |||||||||||||  | ||  |||||||| |||| ||||||| | || |||||||||||||||||||||| |||||| || |||||| || |    
T  7578560 tgctaatattggtcttgcattggcttcacctgacttg-ttttagtctgatagattgcctgactccattagaggagagtgcaataggaataggttgggtat 7578658  T
Q  302 gcccaacttta 312  Q
    |||||||||||    
T  7578659 gcccaacttta 7578669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 296
Target Start/End: Original strand, 9701256 - 9701549
Alignment:
Q  2 attgagattgctcacataaatggtttctcaaatttttggttggaaacagactcccaattggtcattttagctttcaaatatgtttctactgttccttggg 101  Q
    ||||||||||||||||| ||||||||||  ||||||||||||||||||||||| |||||| | ||||| ||||| |||| | ||||    ||||||||||    
T  9701256 attgagattgctcacattaatggtttcttgaatttttggttggaaacagactcacaattgattattttggcttttaaatctatttccttggttccttggg 9701355  T
Q  102 ttttaagaaataggtggctcaattgtctggttaggattagacatatgagttttgtggtgtctcatatctatagagagggcaatgcttgtgctgatagtct 201  Q
    |||||||||||||||||||||||||  | ||||| || || || ||||  ||||||||||||||||||||||| |||||||||| |||||| || |  ||    
T  9701356 ttttaagaaataggtggctcaattgcttagttagaatcaggcagatgaaatttgtggtgtctcatatctatagggagggcaatgtttgtgcggacaacct 9701455  T
Q  202 tgctaatgttggtcttgcattaacctcgtctgacttgtttttggtctgatggcttacctgactccattagaggagagtacaatagaaacaggttg 296  Q
    |||||||  ||||||||||||  | ||  |||||||| |||||||||||| | ||  |||||| ||||||||||||||||||||| || ||||||    
T  9701456 tgctaatagtggtcttgcattggcttcacctgacttg-ttttggtctgatagtttgtctgacttcattagaggagagtacaataggaataggttg 9701549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 14723117 - 14723427
Alignment:
Q  1 tattgagattgctcacataaatggtttctcaaatttttggttggaaacagactcccaattggtcattttagctttcaaatatgtttctactgttccttgg 100  Q
    |||| ||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| | |||||  |||||||||     
T  14723117 tattaagattgctcacatcaatggtttctcaaatttttggttgcaaacagactctcaattggtcattttagctttcaaatctttttctgttgttccttga 14723216  T
Q  101 gttttaagaaataggtggctcaattgtctggttaggattagacatatgagttttgtggtgtctcatatctatagagagggcaatgcttgtgctgatagtc 200  Q
     ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  14723217 attttaagaaataggtggctcaattgtctggttaggattagacagatgagttttgtggtgtctcatatctatagagagggcaatgcttgtgctgacaatc 14723316  T
Q  201 ttgctaatgttggtcttgcattaacctcgtctgacttgtttttggtctgatggcttacctgactccattagaggagagtacaatagaaacaggttgagtg 300  Q
    |||||||||||||||||||||||| ||| ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||| ||     
T  14723317 ttgctaatgttggtcttgcattaatctcttctaacttg-ttttggtctaatggcttacctgactccattagaggagagtacaataagaacaggttgggta 14723415  T
Q  301 tgcccaacttta 312  Q
    ||||||||||||    
T  14723416 tgcccaacttta 14723427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 12218855 - 12218635
Alignment:
Q  2 attgagattgctcacataaatggtttctcaaatttttggttggaaacagactcccaattggtcattttagctttcaaatatgtttctactgttccttggg 101  Q
    ||||||||||||||||| ||||||||||  |||||||||||||| |||||||| |||||||| ||||| |||||||||| | ||||    ||||||||||    
T  12218855 attgagattgctcacattaatggtttctggaatttttggttggagacagactcacaattggttattttggctttcaaatctatttccttggttccttggg 12218756  T
Q  102 ttttaagaaataggtggctcaattgtctggttaggattagacatatgagttttgtggtgtctcatatctatagagagggcaatgcttgtgctgatagtct 201  Q
    |||||||||||||||||||||||||  | ||||| || ||||| ||||| ||||||||||||||||| ||||||||||||||||||||| | || || ||    
T  12218755 ttttaagaaataggtggctcaattgcttagttagaatcagacagatgagatttgtggtgtctcatatatatagagagggcaatgcttgtccggacagcct 12218656  T
Q  202 tgctaatgttggtcttgcatt 222  Q
    || |||| |||||||||||||    
T  12218655 tgttaatattggtcttgcatt 12218635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 35 - 312
Target Start/End: Complemental strand, 28184687 - 28184413
Alignment:
Q  35 ttttggttggaaacagactcccaattggtcattttagctttcaaatatgtttctactgttccttgggttttaagaaataggtggctcaattgtctggtta 134  Q
    |||||||| |||||||| || |||||||||| |||||||||||| | |  || |   |||||||||||  | |||||||||||||| || ||| ||   |    
T  28184687 ttttggttagaaacagattcacaattggtcactttagctttcaactcttcttttgtggttccttgggtccttagaaataggtggcttaactgtatgtaca 28184588  T
Q  135 ggattagacatatgagttttgtggtgtctcatatctatagagagggcaatgcttgtgctgatagtcttgctaatgttggtcttgcattaacctcgtctga 234  Q
    |||||||||||||||| ||| || |||| || |||| ||||||||| ||||||||||| || |||||||| ||| |||||||| ||||||| || |||||    
T  28184587 ggattagacatatgagatttttg-tgtcgcacatctttagagagggaaatgcttgtgccgacagtcttgcaaatattggtctttcattaacttcttctga 28184489  T
Q  235 cttgtttttggtctgatggcttacctgactccattagaggagagtacaatagaaacaggttgagtgtgcccaacttta 312  Q
    |||||||| |||||||  | | |||||||||||||||||||||||||||||| || |||||| || ||||||||||||    
T  28184488 cttgtttt-ggtctgacaggt-acctgactccattagaggagagtacaataggaataggttgggtatgcccaacttta 28184413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 312
Target Start/End: Complemental strand, 19196047 - 19195974
Alignment:
Q  239 tttttggtctgatggcttacctgactccattagaggagagtacaatagaaacaggttgagtgtgcccaacttta 312  Q
    ||||||||||||||   | ||||| | ||||||||||||||||| ||| || |||||| || ||||||||||||    
T  19196047 tttttggtctgatgttattcctgatttcattagaggagagtacactaggaataggttgggtatgcccaacttta 19195974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 312
Target Start/End: Original strand, 48920715 - 48921014
Alignment:
Q  12 ctcacataaatggtttctcaaatttttggttggaaacagactcccaattggtcattttagctttcaaatatgtttctactgttccttgggttttaagaaa 111  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | | |||   ||||||||||||||||||||    
T  48920715 ctcacatcaatggtttctcaaatttttggttggaaaaagactcccaattggtcattttagctttcaaatctctctctgtggttccttgggttttaagaaa 48920814  T
Q  112 taggtggctcaattgtctggttaggattagacatatgagttttgtggtgtctcatatctatagagagggcaatgcttgtgctgatagtcttgctaatgtt 211  Q
    ||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||    
T  48920815 taggtggcttaactgtctggttaggattagacagatgagttttgtggtgtctcatatctatagggagggcaatgcttgtgctgacaatcttgctaatgtt 48920914  T
Q  212 ggtcttgcattaacctcgtctgacttgtttttggtctgatggcttacctgactccattagaggagagtacaatagaaacaggttgagtgtgcccaacttt 311  Q
    ||||| || ||||| ||  |||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||| || |||||||||||    
T  48920915 ggtctagccttaacttctgctgacttg-ttttggtctgatgacttacttgacttcattagaggagagtacaataggaacaggttgggtatgcccaacttt 48921013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 35 - 312
Target Start/End: Original strand, 34428231 - 34428507
Alignment:
Q  35 ttttggttggaaacagactcccaattggtcattttagctttcaaatatgtttctactgttccttgggttttaagaaataggtggctcaattgtctggtta 134  Q
    |||||||| |||||| | || |||||||||| ||||||||||||||    ||||   |||||||||||  | | ||| |||||||| || ||| ||  ||    
T  34428231 ttttggttagaaacatattcacaattggtcactttagctttcaaatcatcttctgtggttccttgggtccttaaaaacaggtggcttaactgtatgtata 34428330  T
Q  135 ggattagacatatgagttttgtggtgtctcatatctatagagagggcaatgcttgtgctgatagtcttgctaatgttggtcttgcattaacctcgtctga 234  Q
    |||||||||||||||||||| | ||||| || |||| ||||||||| ||||||||||| || |||||||| ||| |||||||| ||||||| || |||||    
T  34428331 ggattagacatatgagtttttttgtgtcacacatctttagagagggaaatgcttgtgccgacagtcttgcaaatattggtctttcattaacttcttctga 34428430  T
Q  235 cttgtttttggtctgatggcttacctgactccattagaggagagtacaatagaaacaggttgagtgtgcccaacttta 312  Q
    |||| ||||||||||   |||||||||| ||||||||||||||||||||||| ||||||||| || || |||||||||    
T  34428431 cttg-ttttggtctgggagcttacctgattccattagaggagagtacaataggaacaggttgggtatgtccaacttta 34428507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 166 - 312
Target Start/End: Original strand, 40679060 - 40679204
Alignment:
Q  166 tatctatagagagggcaatgcttgtgctgatagtcttgctaatgttggtcttgcattaacctcgtctgacttgtttttggtctgatggcttacctgactc 265  Q
    ||||| ||||||||| |||| |||||| || |||||||  ||| |||||||| ||||||| || |||||||| ||||  ||||||   ||||||||||||    
T  40679060 tatctttagagagggaaatgtttgtgccgacagtcttgtaaatattggtctttcattaacttcttctgacttatttt--gtctgacaacttacctgactc 40679157  T
Q  266 cattagaggagagtacaatagaaacaggttgagtgtgcccaacttta 312  Q
     ||||||||||| || ||||| ||||||||| || ||||||||||||    
T  40679158 tattagaggagattataataggaacaggttgggtatgcccaacttta 40679204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 7705551 - 7705861
Alignment:
Q  1 tattgagattgctcacataaatggtttctcaaatttttggttggaaacagactcccaattggtcattttagctttcaaatatgtttctactgttccttgg 100  Q
    ||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||| | | |||   |||||||||    
T  7705551 tattgagatagctcacatcaatggtttctctaatttttagttggaaacagactcccaattggtcattttagcttttaaatctctctctgtggttccttgg 7705650  T
Q  101 gttttaagaaataggtggctcaattgtctggttaggattagacatatgagttttgtggtgtctcatatctatagagagggcaatgcttgtgctgatagtc 200  Q
    |||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| | ||    
T  7705651 gttttaagaaataggtggcttaactgtctggttaggattagacagatgagttttgtggtgtctcatatctatagggagggcaatgcttgtgctgacaatc 7705750  T
Q  201 ttgctaatgttggtcttgcattaacctcgtctgacttgtttttggtctgatggcttacctgactccattagaggagagtacaatagaaacaggttgagtg 300  Q
    |||||||||||||||| || ||||| ||  |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||  |     
T  7705751 ttgctaatgttggtctagctttaacttctgctgacttg-ttttggtctgatgacttacctgactccattagaggagagtacaataagaacaggttggata 7705849  T
Q  301 tgcccaacttta 312  Q
    ||||||||||||    
T  7705850 tgcccaacttta 7705861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 312
Target Start/End: Original strand, 55468669 - 55468980
Alignment:
Q  2 attgagattgctcacataaatggtttctcaaatttttggttggaaacagactcccaattggtcattttagctttcaaatatgtttctactgttccttggg 101  Q
    ||||||||||||||||| ||||||||||  ||||||||||||||| ||||||| |||||||| ||||| | |||||||| | ||||    ||||||| ||    
T  55468669 attgagattgctcacattaatggtttcttgaatttttggttggaagcagactcacaattggttattttggttttcaaatctatttccttggttcctttgg 55468768  T
Q  102 ttttaagaaataggtggctcaattgtctggtta--ggattagacatatgagttttgtggtgtctcatatctatagagagggcaatgcttgtgctgatagt 199  Q
    ||||||||||||||||||| |||||  | ||||  | || ||||| ||||| ||| ||||||||||||| ||||||||||||||| ||||||| || ||     
T  55468769 ttttaagaaataggtggcttaattgcttagttatagaatcagacagatgagatttatggtgtctcatatttatagagagggcaatacttgtgcggacagc 55468868  T
Q  200 cttgctaatgttggtcttgcattaacctcgtctgacttgtttttggtctgatggcttacctgactccattagaggagagtacaatagaaacaggttgagt 299  Q
    ||||||||| |||||||||||||  | ||  |||||||| |||||||||||| | || ||||||||||||||||||||||||||||| || || ||| ||    
T  55468869 cttgctaatattggtcttgcattggcttcacctgacttg-ttttggtctgatagattgcctgactccattagaggagagtacaataggaatagattgggt 55468967  T
Q  300 gtgcccaacttta 312  Q
     ||||||||||||    
T  55468968 atgcccaacttta 55468980  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 92 - 216
Target Start/End: Complemental strand, 9047671 - 9047547
Alignment:
Q  92 gttccttgggttttaagaaataggtggctcaattgtctggttaggattagacatatgagttttgtggtgtctcatatctatagagagggcaatgcttgtg 191  Q
    ||||||||||  ||||||||||| ||||  |||||  ||| |||  | ||| ||||||| |||||||||||||| |  |||||||| || ||||||||||    
T  9047671 gttccttggggattaagaaatagatggcaaaattgcatggctagattgagaaatatgaggtttgtggtgtctcacaattatagagaagggaatgcttgtg 9047572  T
Q  192 ctgatagtcttgctaatgttggtct 216  Q
    |||| || ||||| ||| |||||||    
T  9047571 ctgacagccttgcgaatcttggtct 9047547  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 27189819 - 27189880
Alignment:
Q  2 attgagattgctcacataaatggtttct--caaatttttggttggaaacagactcccaattg 61  Q
    ||||||||||||||||| ||||||||||   || ||||||||||||||||||||| ||||||    
T  27189819 attgagattgctcacattaatggtttcttgtaattttttggttggaaacagactcacaattg 27189880  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 11673593 - 11673521
Alignment:
Q  240 ttttggtctgatggcttacctgactccattagaggagagtacaatagaaacaggttgagtgtgcccaacttta 312  Q
    ||||||||||||  | | ||||| ||||||||||||||||||| |||||| |||||| |  ||||||||||||    
T  11673593 ttttggtctgatttcattcctgaatccattagaggagagtacactagaaataggttgggaatgcccaacttta 11673521  T

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Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 35 - 312
Target Start/End: Original strand, 19920944 - 19921220
Alignment:
Q  35 ttttggttggaaacagactcccaattggtcattttagctttcaaat-atgtttctactgttccttgggttttaagaaataggtggctcaattgtctggtt 133  Q
    |||||||| |||||||| || |||||||||| |||| ||||||||| || ||| |   |||||||||||  | ||||| ||||||||  | ||| ||  |    
T  19920944 ttttggttagaaacagattcacaattggtcactttaactttcaaatcatcttt-tgtggttccttgggtccttagaaacaggtggctttactgtatgtat 19921042  T
Q  134 aggattagacatatgagttttgtggtgtctcatatctatagagagggcaatgcttgtgctgatagtcttgctaatgttggtcttgcattaacctcgtctg 233  Q
    ||||||||| | ||||||||| | ||||| |  |||| ||||||||| |||||||||||||| |||||||| ||| ||| |||| ||||||| || ||||    
T  19921043 aggattagatagatgagtttttttgtgtcacgcatctttagagagggaaatgcttgtgctgacagtcttgcaaatattgatctttcattaacttcttctg 19921142  T
Q  234 acttgtttttggtctgatggcttacctgactccattagaggagagtacaatagaaacaggttgagtgtgcccaacttta 312  Q
    ||||||||| |||||||  |||||||||||||||||||||||||||||||||| ||||||||| || || |||||||||    
T  19921143 acttgtttt-ggtctgacagcttacctgactccattagaggagagtacaataggaacaggttgggtatgtccaacttta 19921220  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 10012742 - 10012808
Alignment:
Q  138 ttagacatatgagttttgtggtgtctcatatctatagagagggcaatgcttgtgctgatagtcttgc 204  Q
    ||||| ||||||| ||||||||||| || || ||||| || || ||||||||||||||||| |||||    
T  10012742 ttagaaatatgagatttgtggtgtcacacatatatagggaagggaatgcttgtgctgatagccttgc 10012808  T

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Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 146 - 312
Target Start/End: Original strand, 33527572 - 33527736
Alignment:
Q  146 atgagttttgtggtgtctcatatctatagagagggcaatgcttgtgctgatagtcttgctaatgttggtcttgcattaacctcgtctgacttgtttttgg 245  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||||||||||||||||| || ||||| ||  |||||||||||| ||    
T  33527572 atgagttttgtggtgtctcatatctatagggagg-caatgcttgtgctgacaatcttgctaatgttggtctagctttaacttctgctgacttgtttt-gg 33527669  T
Q  246 tctgatggcttacctgactccattagaggagagtacaatagaaacaggttgagtgtgcccaacttta 312  Q
    ||||||| |||||||||||||||||||| |||||||||||| ||||||||   | ||||||||||||    
T  33527670 tctgatgacttacctgactccattagagaagagtacaataggaacaggttagatatgcccaacttta 33527736  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 34661625 - 34661705
Alignment:
Q  1 tattgagattgctcacataaatggtttctcaaatttttggttggaaacagactcccaattggtcattttagctttcaaata 81  Q
    ||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34661625 tattgagatagctcacatcgatggtttctcaaatttttggttggaaacagactcccaattggtcattttagctttcaaata 34661705  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 34661701 - 34661754
Alignment:
Q  109 aaataggtggctcaattgtctggttaggattagacatatgagttttgtggtgtc 162  Q
    |||||||||||| || ||||||||||||||||||||||| ||||||||||||||    
T  34661701 aaataggtggcttaactgtctggttaggattagacatataagttttgtggtgtc 34661754  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 18253713 - 18253668
Alignment:
Q  1 tattgagattgctcacataaatggtttctcaaatttttggttggaa 46  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||    
T  18253713 tattgagattgctcacatcaatggtttctcaaacttttggttggaa 18253668  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 10194232 - 10194157
Alignment:
Q  129 tggttaggattagacatatgagttttgtggtgtctcatatctatagagagggcaatgcttgtgctgatagtcttgc 204  Q
    |||||||  ||||| ||||||| ||||| |||||||| || |||||||| || ||||| |||||||||||||||||    
T  10194232 tggttagacttagagatatgaggtttgttgtgtctcacatttatagagaaggtaatgcatgtgctgatagtcttgc 10194157  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 22564637 - 22564708
Alignment:
Q  145 tatgagttttgtggtgtctcatatctatagagagggcaatgcttgtgctgatagtcttgctaatgttggtct 216  Q
    |||||| |||||||||||||| || |||||||| || |||| ||||||||| || ||||| ||| |||||||    
T  22564637 tatgaggtttgtggtgtctcacatttatagagaagggaatgtttgtgctgacagccttgcgaatcttggtct 22564708  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 21747419 - 21747491
Alignment:
Q  144 atatgagttttgtggtgtctcatatctatagagagggcaatgcttgtgctgatagtcttgctaatgttggtct 216  Q
    ||||||| |||||||||||||| || |||||||| || |||||||||||||| || ||||| ||| |||||||    
T  21747419 atatgaggtttgtggtgtctcacatttatagagaagggaatgcttgtgctgacagccttgcgaatcttggtct 21747491  T

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Target: scaffold0664 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 2042 - 2108
Alignment:
Q  138 ttagacatatgagttttgtggtgtctcatatctatagagagggcaatgcttgtgctgatagtcttgc 204  Q
    ||||| ||||||| ||||||||||| || || ||||| || || ||||||||||||||||| |||||    
T  2042 ttagaaatatgagatttgtggtgtcacacatatatagggaagggaatgcttgtgctgatagccttgc 2108  T

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Target: scaffold0126 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 38881 - 38947
Alignment:
Q  138 ttagacatatgagttttgtggtgtctcatatctatagagagggcaatgcttgtgctgatagtcttgc 204  Q
    ||||| ||||||| ||||||||||| || || ||||| || || ||||||||||||||||| |||||    
T  38881 ttagaaatatgagatttgtggtgtcacacatatatagggaagggaatgcttgtgctgatagccttgc 38947  T

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Target: scaffold0126; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 43856 - 43922
Alignment:
Q  138 ttagacatatgagttttgtggtgtctcatatctatagagagggcaatgcttgtgctgatagtcttgc 204  Q
    ||||| ||||||| ||||||||||| || || ||||| || || ||||||||||||||||| |||||    
T  43856 ttagaaatatgagatttgtggtgtcacacatatatagggaagggaatgcttgtgctgatagccttgc 43922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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