View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20634_high_30 (Length: 328)
Name: NF20634_high_30
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20634_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 32220143 - 32220451
Alignment:
| Q |
20 |
cgccatctatgagtaaattaaaatacatggaccaattctttctttccnnnnnnntatgttattccaacattagattttgaacaatgtggataaagggtaa |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||| ||| |
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| T |
32220143 |
cgccatctatgagtaaattaaaatacatggaccaattctttctttccaaaaaaatatgttattcaaacattagattttgaacaatgtgggtaaaggataa |
32220242 |
T |
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| Q |
120 |
tgaaatcaccattagaaagactaattcttggtttaagaaagcatattttctattccta-annnnnnnagcatattttatcgtcttgttttctcattgatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32220243 |
tgaaatcaccattagaaagactaattcttggtttaagaaagcatattttctattcctatttttttttagcatattttatcgtcttgttttctcattgatt |
32220342 |
T |
|
| Q |
219 |
cgaacataaaatgttagttttgggccaata-tagagctttcacaaatcaaacaaaatattgctcttctttcttgtttgagagataattctcattgacttt |
317 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32220343 |
cgaacataaaatgttagttttgggccaatattagaactttcacaaatcaaacaaaatattgctcttctttcttgtttgagagataattctcattaacttt |
32220442 |
T |
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| Q |
318 |
gattctgtg |
326 |
Q |
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|||| |||| |
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| T |
32220443 |
gattatgtg |
32220451 |
T |
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