View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20634_high_41 (Length: 269)
Name: NF20634_high_41
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20634_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 33771565 - 33771324
Alignment:
| Q |
10 |
gcagagacattgtgattgaatattcgaagaaagtaagagatttaggctttacattctttgagttattctcagaagctttaggcctggatccttcttacct |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33771565 |
gcagagacattgtgattgaatattcgaagaaagtaagagatttaggctttacattctttgagatattctcagaagctttaggcctggatccttcttacct |
33771466 |
T |
|
| Q |
110 |
taagaaactggcctcaccaaatggacattttattgcgtgtcactactatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgat |
209 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33771465 |
taagaaattggcctcaccaaatggacattttattgcgtgtcactactatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgat |
33771366 |
T |
|
| Q |
210 |
ggtgacttcatgacaattcttctacaagaccatattggcggt |
251 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33771365 |
ggtgacttcatgacaattcttctacaagaccgtattggcggt |
33771324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 33768726 - 33768495
Alignment:
| Q |
10 |
gcagagacattgtgattgaatattcgaagaaagtaagagatttaggctttacattctttgagttattctcagaagctttaggcctggatccttcttacct |
109 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||||||||| ||| |||||||| |||||||||||||||||||||| |||||||||| || |
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| T |
33768726 |
gcagagacattgtgattgaatattcaaagaaagtaagagctttaggcttgacaatctttgagctattctcagaagctttaggccttcatccttcttatct |
33768627 |
T |
|
| Q |
110 |
taagaaactggcctcaccaaatggacattttattgcgtgtcactactatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgat |
209 |
Q |
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| T |
33768626 |
taaagatttggccttagactatggacaatttcttttgtgtcactactatcctccatgccctgaacccgaattaactatgggaacttctaagcacaccgat |
33768527 |
T |
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| Q |
210 |
ggtgacttcatgacaattcttctacaagacca |
241 |
Q |
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||| |||||||||||||||||||||||||| |
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| T |
33768526 |
attgatttcatgacaattcttctacaagacca |
33768495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 33762132 - 33761895
Alignment:
| Q |
10 |
gcagagacattgtgattgaatattcgaagaaagtaagagatttaggctttacattctttgagttattctcagaagctttaggcctggatccttcttacct |
109 |
Q |
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||||||||||||||||||||||||| ||||||||||| | ||||||| ||||| |||||||| ||| |||||||||||||||||| |||||||||| || |
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| T |
33762132 |
gcagagacattgtgattgaatattcaaagaaagtaagggctttaggccttacaatctttgagctatactcagaagctttaggccttcatccttcttatct |
33762033 |
T |
|
| Q |
110 |
taagaaactggcctcaccaaatggacattttattgcgtgtcactactatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgat |
209 |
Q |
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|| ||| || |||| || ||||||| ||| || |||||||||||||||| |||| |||||||| ||||||||||||||| |||| || ||||| ||| |
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| T |
33762032 |
tacaaaattgctctcaacatatggacaatttcttctgtgtcactactatcctgcatgccctgaacccgaattaactatgggaacttcgaagcacaccgat |
33761933 |
T |
|
| Q |
210 |
ggtgacttcatgacaattcttctacaagaccatattgg |
247 |
Q |
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||| |||||||||||||||||||||||||| ||||| |
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| T |
33761932 |
attgatttcatgacaattcttctacaagaccagattgg |
33761895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 250
Target Start/End: Complemental strand, 28690708 - 28690605
Alignment:
| Q |
147 |
tgtcactactatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgatggtgacttcatgacaattcttctacaagaccatattg |
246 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||| | | |||||||| || ||||||||| || || ||| | ||||| ||||||| |
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| T |
28690708 |
tgtcactattaccctccatgtcctgaacctgaattaactatgggaaataccaatcacacagacaatgacttcataactatacttttgcaagatcatattg |
28690609 |
T |
|
| Q |
247 |
gcgg |
250 |
Q |
| |
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|||| |
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| T |
28690608 |
gcgg |
28690605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 241
Target Start/End: Complemental strand, 49464458 - 49464365
Alignment:
| Q |
148 |
gtcactactatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgatggtgacttcatgacaattcttctacaagacca |
241 |
Q |
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|||||| |||||| || || ||||||||||| ||||||||||| || |||| || |||||| || ||||||||||| | |||||||||||||| |
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| T |
49464458 |
gtcactgctatccaccgtgccctgaacctgagttaactatgggcactacaaagcatactgatagtaacttcatgacattacttctacaagacca |
49464365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 19846022 - 19846097
Alignment:
| Q |
148 |
gtcactactatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgatggtgacttcatgac |
223 |
Q |
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||||||||| ||| ||||| ||||||||||||||||||||||| | | ||| || ||||||||| |||||||||| |
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| T |
19846022 |
gtcactactttccgccatgccctgaacctgaattaactatgggtgttggaaaacatactgatggtaacttcatgac |
19846097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 19845884 - 19845981
Alignment:
| Q |
10 |
gcagagacattgtgattgaatattcgaagaaagtaagagatttaggctttacattctttgagttattctcagaagctttaggcctggatccttcttac |
107 |
Q |
| |
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||||||| ||||||||||||||||| ||||| |||| |||||||| || | | |||||||||| || ||||| || |||| || |||||||||||| |
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| T |
19845884 |
gcagagatattgtgattgaatattcacagaaaataagtgatttaggtttcagaatctttgagttgttgtcagaggcagtaggacttgatccttcttac |
19845981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 19890978 - 19891020
Alignment:
| Q |
148 |
gtcactactatcctccatgtcctgaacctgaattaactatggg |
190 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||| |
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| T |
19890978 |
gtcattactatccagcatgtcctgaacctgaattaactatggg |
19891020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 1094176 - 1094218
Alignment:
| Q |
148 |
gtcactactatcctccatgtcctgaacctgaattaactatggg |
190 |
Q |
| |
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|||||| |||||| ||||| ||||||||||||||||||||||| |
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| T |
1094176 |
gtcacttctatccaccatgccctgaacctgaattaactatggg |
1094218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 26170986 - 26171068
Alignment:
| Q |
156 |
tatcctccatgtcctgaacctgaattaactatgggagcttcaaatcacactgatggtgacttcatgacaattcttctacaaga |
238 |
Q |
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||||| ||||||||||||||||||||||| ||||| || || | ||||||||| || ||||||||||| |||||||||| |
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| T |
26170986 |
tatccaccatgtcctgaacctgaattaaccatgggtgcgtccacacacactgatcctgctttcatgacaatagttctacaaga |
26171068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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