View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20634_high_6 (Length: 543)
Name: NF20634_high_6
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20634_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Complemental strand, 7709722 - 7709180
Alignment:
| Q |
1 |
tgtcaatgctagagatgcaacaaagcccgctagctcgtcaaataccgctgccgatgtcaatgttaaagatgcaacaacctctaccaataatgttgtataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7709722 |
tgtcaatgctagagatgcaacaaagcccgctagctcgtcaaataccgctgccaatgtcaatgttaaagatgcaacaacctctaccaataatgttgtataa |
7709623 |
T |
|
| Q |
101 |
tttgatgtagaatcatta-tatttacatggttttgcttcgaaaatattg---------ttttttaaacaaacacattattatttatcaattgcattcaaa |
190 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7709622 |
tttgatgtagaatcattaatatttacatggttttgcttcgaaagtattaatggtataattttataaacaaacacattattatttatcaattacattcaaa |
7709523 |
T |
|
| Q |
191 |
tagaggtttggatataaaattattgtacttgacaaaaattgaacaccaatgtgaaactatattatgacgttaatgaaacattaatgtgtgtgaacaatgt |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7709522 |
tagaggtttggatataaaattattgtacttgacaaaaattgaacaccaatgtgaaa-----ttatgacgttaatgaaacattaatgtgtgtgaacaatgc |
7709428 |
T |
|
| Q |
291 |
aaaactataatagatcttcctcttgttgatgatgacttaaagcaaaacaata---ttacgttaatgaaaatttaatgtgtgtgaagaatgtgtgaataaa |
387 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||| |||| |||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7709427 |
aaaactatattagatcttcctcttgtt-atgatgacttaaagaaaaataatagtattacgttaatgaaaatttaatgtgtttgaagaatgtgtgaataaa |
7709329 |
T |
|
| Q |
388 |
tgaagcaatatatagaagatagtatagattatgaagattcacataaattaatgattaacactggttcattcaatttggactaatattgtctttacaactt |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7709328 |
tgaagcaatatatagaagatagtatagattatgaagattcacataaattaatgattaacacaggttcattcaatttggactaatcttgtctttacaactt |
7709229 |
T |
|
| Q |
488 |
gtgaannnnnnnnnactagggcttgaaattcgtcatctgatctgtgctc |
536 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7709228 |
gtgattttttttttactagggcttgaaattcgtcatctgatctgtgctc |
7709180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 7709776 - 7709700
Alignment:
| Q |
1 |
tgtcaatgctagagatgcaacaaagcccgctagctcgtcaaataccgctgccgatgtcaatgttaaagatgcaacaa |
77 |
Q |
| |
|
|||||||||||||||| ||||||| | |||||||||||||| ||||| || | ||||||||| || ||||||||||| |
|
|
| T |
7709776 |
tgtcaatgctagagattcaacaaatctcgctagctcgtcaactaccgttgtcaatgtcaatgctagagatgcaacaa |
7709700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 7709827 - 7709754
Alignment:
| Q |
4 |
caatgctagagatgcaacaaagcccgctagctcgtcaaataccgctgccgatgtcaatgttaaagatgcaacaa |
77 |
Q |
| |
|
||||||||||||| ||||| |||| |||||| ||||||||||||||| | ||||||||| || |||| |||||| |
|
|
| T |
7709827 |
caatgctagagattcaacacagcctgctagcccgtcaaataccgctgtcaatgtcaatgctagagattcaacaa |
7709754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University