View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20634_high_8 (Length: 509)
Name: NF20634_high_8
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20634_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 42393653 - 42394149
Alignment:
| Q |
1 |
cctggtttgttcattatttctgccattgcaaactcaacggtattggaggatgtgtctgatccaccaagtaccatgtcttgttcatacaaactcaatggta |
100 |
Q |
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| T |
42393653 |
cctggtttgttcatcatttctgccattgcaaattcaacggtattggaggatgtgtctgatccaccaagtaccatgtcctgttcatacaaactcaatggta |
42393752 |
T |
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| Q |
101 |
ttaagttcttcaacacgcgccttagggcacatgttagcattctcaaataaattttcatttgaatcagagttaaacaaaccatataccgcnnnnnnnngaa |
200 |
Q |
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| T |
42393753 |
ttaagttcttcaacgcacgccttagggcacatgttagcattctcaaataaattttaatttgaatcagagttaaacaaaccatataccgcaaaaaa---aa |
42393849 |
T |
|
| Q |
201 |
gtgagaagacgcaaaacataaatgtgtaacaaaggtagcataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctc |
300 |
Q |
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| T |
42393850 |
gtgagaagacgctaaacataaatgtgtaacaaaggtagcataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctc |
42393949 |
T |
|
| Q |
301 |
cttcaaattcaacnnnnnnnnnnnnnnntccttactttcactttcctttccttctacatccttcaccattcgttcaccaatcatcttttcaaatattcca |
400 |
Q |
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| T |
42393950 |
cttcaaattcaacaaaaactgcaaaaaatccttactttcactctcctttccttctacatccttcaccattcgttcaccaatcatcttttcaaatattcca |
42394049 |
T |
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| Q |
401 |
tcaaaacgaggcaccaaaagattcatatctttcacaataccctgcaaatcaaaccgagccaacgaaggnnnnnnntccgacaagttcggcttccctatga |
500 |
Q |
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| T |
42394050 |
tcaaaacgaggcaccaaaagattcatatctttcacaataccctgcaaatcaaaccgagccagcgcaggaaaaaaatctgacaagttcggcttccctatga |
42394149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 370 - 463
Target Start/End: Original strand, 42378104 - 42378197
Alignment:
| Q |
370 |
tcgttcaccaatcatcttttcaaatattccatcaaaacgaggcaccaaaagattcatatctttcacaataccctgcaaatcaaaccgagccaac |
463 |
Q |
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| T |
42378104 |
tcgttcaccaatcatcttctcaaatatcccatcaaagcgaggcaccaaagcattcatatctttcacaacaccctgcaaatcaaaccgggccaac |
42378197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 42377102 - 42377182
Alignment:
| Q |
2 |
ctggtttgttcattatttctgccattgcaaactcaacggtattggaggatgtgtctgatccaccaagtaccatgtcttgtt |
82 |
Q |
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| T |
42377102 |
ctggtttgttcatcatttctgccattacaaactcaattgtgttggaggatgtgtctgatccacccactaccatgtcctgtt |
42377182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 313
Target Start/End: Original strand, 42377959 - 42378044
Alignment:
| Q |
228 |
aacaaaggtagcataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctccttcaaattcaac |
313 |
Q |
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| T |
42377959 |
aacaaaagtagcataccatgagtagagccttaacatgagtatttgtaaacggtgtcttagaatcaccctcctccttcaaattcaac |
42378044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 42387455 - 42387539
Alignment:
| Q |
7 |
ttgttcattatttctgccattgcaaactcaacggtattggaggatgtgtctgatccaccaagtaccatgtcttgttcatacaaac |
91 |
Q |
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| T |
42387455 |
ttgtccatcatttatgctattacaaactcaattgtgttggaggatgtgtctgatccacccactaccatgtcctgttcatataaac |
42387539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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