View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20634_low_1 (Length: 740)

Name: NF20634_low_1
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20634_low_1
NF20634_low_1
[»] chr1 (15 HSPs)
chr1 (18-724)||(6521636-6522340)
chr1 (199-724)||(6512475-6513000)
chr1 (195-458)||(6516870-6517133)
chr1 (199-440)||(6506562-6506809)
chr1 (528-724)||(6506903-6507099)
chr1 (545-724)||(6517220-6517399)
chr1 (520-637)||(47778041-47778158)
chr1 (520-617)||(47788183-47788280)
chr1 (552-724)||(47760133-47760299)
chr1 (93-156)||(6506438-6506501)
chr1 (219-293)||(47778382-47778456)
chr1 (524-617)||(47781969-47782062)
chr1 (219-322)||(47788475-47788578)
chr1 (552-629)||(6523733-6523810)
chr1 (333-374)||(47759914-47759955)
[»] scaffold0341 (6 HSPs)
scaffold0341 (199-440)||(587-834)
scaffold0341 (199-440)||(8240-8487)
scaffold0341 (528-724)||(928-1124)
scaffold0341 (528-724)||(8581-8778)
scaffold0341 (93-156)||(463-526)
scaffold0341 (93-156)||(8116-8179)
[»] chr7 (1 HSPs)
chr7 (576-721)||(722161-722305)
[»] chr5 (2 HSPs)
chr5 (603-723)||(28856512-28856632)
chr5 (605-655)||(28831318-28831368)


Alignment Details
Target: chr1 (Bit Score: 641; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 18 - 724
Target Start/End: Complemental strand, 6522340 - 6521636
Alignment:
Q  18 cagaattaacacatagtgagacattaaatatttaatatatcaaagatatagtaaaaacacatacaaaaaccaccataaataccttgagaggaagtattgt 117  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6522340 cagaattaacaca--gtgagacattaaatatttaatatatcaaagatatagtaaaaacacatacaaaaaccaccataaataccttgagaggaagtattgt 6522243  T
Q  118 tttgtgcaaacggaggaggagttgagaaagatggcactggcacaggcaccggtgatggcgagggtgaatctgatggcgttggttgatagaagaatgaatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6522242 tttgtgcaaacggaggaggagttgagaaagatggcactggcacaggcaccggtgatggcgagggtgaatctgatggcgttggttgatagaagaatgaatt 6522143  T
Q  218 ggtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttctttgatagattgaaccaaacaatca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6522142 ggtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttctttgatagattgaaccaaacaatca 6522043  T
Q  318 tcacaaaatgttttagacaaatcaggtgtgcattgagctagaccatatatggtttgattattatttggaccaacctcatcacttcctacagcatatttaa 417  Q
    ||||| |||||||||||||||||||||||||||||| | ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  6522042 tcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattacttggaccaacctcatcacttcctacagcatatttaa 6521943  T
Q  418 ggtcactgtcccctgatgcagctttatttcttaaactatccnnnnnnnnnttcaccactttgttaaactcaacctcatttgttgcgttgtttgtattcca 517  Q
    ||||||||||||||||||||||| |||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521942 ggtcactgtcccctgatgcagctctatttcttaaactatccaaaaaaaaattcaccactttgttaaactcaacctcatttgttgcgttgtttgtattcca 6521843  T
Q  518 aacaaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctttt 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6521842 aacaaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtaacgcaacatgcattcttcatcgttgtaccatccaattgcttctttt 6521743  T
Q  618 cggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgttta 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521742 cggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgttta 6521643  T
Q  718 ctttgtc 724  Q
    |||||||    
T  6521642 ctttgtc 6521636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 199 - 724
Target Start/End: Original strand, 6512475 - 6513000
Alignment:
Q  199 gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttctttgat 298  Q
    |||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||||| |||||||||||  |||  ||| |||||||    
T  6512475 gttgatagaagagtgaatcggtttcatatctcaaataacaacttggtctaacaattctagcacccaacctgttgttacaacatcttgggattgctttgat 6512574  T
Q  299 agattgaaccaaacaatcatcacaaaatgttttagacaaatcaggtgtgcattgagctagaccatatatggtttgattattatttggaccaacctcatca 398  Q
    |||||  |||||||||||||| || |||| ||||||||||||||||||||||||| | ||| ||||||| ||||||||||||||| ||||||||||||||    
T  6512575 agattttaccaaacaatcatcgcacaatgatttagacaaatcaggtgtgcattgaacaagagcatatatagtttgattattattttgaccaacctcatca 6512674  T
Q  399 cttcctacagcatatttaaggtcactgtcccctgatgcagctttatttcttaaactatccnnnnnnnnnttcaccactttgttaaactcaacctcatttg 498  Q
    ||||| |||||||||||||||||||| || ||||||| |||| ||||||||||| |||||         ||||  ||||| | ||| ||| | |||||||    
T  6512675 cttccaacagcatatttaaggtcactatcacctgatgaagctctatttcttaaattatccaataaatttttcagtactttatcaaattcatcttcatttg 6512774  T
Q  499 ttgcgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgta 598  Q
    | || |||||   | ||||  | ||||||  ||||| | |||| || ||||| ||||||||||||| |||||| ||||||||||||   || || |  ||    
T  6512775 tagcattgttcaaactccatcctaaataaaaaggtctagtttcattcagaccgaatattgaacggtatgagtaacgcaacatgcatgtatcttcatcata 6512874  T
Q  599 ccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctcta 698  Q
    ||| ||||| || |||||||| ||||||||| ||||||||||||  |||| |||||| || | ||||||||||||||||||| |||||||||||||||||    
T  6512875 ccaaccaatagcctcttttcgattttgacaaagttgtgttagaaagacagatgaattctttatgcaattttgacaatcattgggtttgacatctcctcta 6512974  T
Q  699 catagtccaatcgcgtttactttgtc 724  Q
    || |||||||| ||||||||||||||    
T  6512975 caaagtccaatagcgtttactttgtc 6513000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 195 - 458
Target Start/End: Original strand, 6516870 - 6517133
Alignment:
Q  195 gttggttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttctt 294  Q
    ||||||||||| |||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||  | ||| |||||||||||  |||  ||||| |    
T  6516870 gttggttgataaaagagtgaatcggtttcatatctcaaataacaactgggtctaacaactctagcactcatcctgttgttacaacatattgcgatttcat 6516969  T
Q  295 tgatagattgaaccaaacaatcatcacaaaatgttttagacaaatcaggtgtgcattgagctagaccatatatggtttgattattatttggaccaacctc 394  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6516970 tgatagattgaaccaaacaatcatcacaaaatgttttaaacaaatcaggtgtgcattgagctagaccatatatggtttgattattatttggaccaacctc 6517069  T
Q  395 atcacttcctacagcatatttaaggtcactgtcccctgatgcagctttatttcttaaactatcc 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  6517070 atcacttcctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatcc 6517133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 199 - 440
Target Start/End: Original strand, 6506562 - 6506809
Alignment:
Q  199 gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-acctatt-----gttacaacaatttgaaatttc 292  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||| |||||| |||||||     || |||||||||||  |||||    
T  6506562 gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacctattctattgtcacaacaatttgggatttc 6506661  T
Q  293 tttgatagattgaaccaaacaatcatcacaaaatgttttagacaaatcaggtgtgcattgagctagaccatatatggtttgattattatttggaccaacc 392  Q
    ||||||||||| | ||||||| |||||||| ||||||| |||||||||||||||||||||| | ||| || ||||||||||||||||||||||||||| |    
T  6506662 tttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatc 6506761  T
Q  393 tcatcacttcctacagcatatttaaggtcactgtcccctgatgcagct 440  Q
     ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  6506762 acatcacttcctacagcatatttaaggtcactttcccccgatgcagct 6506809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 528 - 724
Target Start/End: Original strand, 6506903 - 6507099
Alignment:
Q  528 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgac 627  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| |||||||||||||||||||||||| |||||||    
T  6506903 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgac 6507002  T
Q  628 aatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtc 724  Q
    || |||||||||||||  |||||||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||||||||||    
T  6507003 aaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtc 6507099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 545 - 724
Target Start/End: Original strand, 6517220 - 6517399
Alignment:
Q  545 gagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaaga 644  Q
    ||||||||||||||||||| ||||||| ||||||||||||   ||||| | |||||| |||||||||| |||||  ||||||||| ||||||||||||      
T  6517220 gagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaacgttgtgttagaaac 6517319  T
Q  645 acagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtc 724  Q
    ||||||||||||| ||| |||||| ||||||||||  |||| | ||||||||| ||||||||||| ||||||||||||||    
T  6517320 acagttgaattttggagacaatttcgacaatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtc 6517399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 520 - 637
Target Start/End: Complemental strand, 47778158 - 47778041
Alignment:
Q  520 caaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcg 619  Q
    ||||||| |||||||||||||| ||||| | |||||||||||||| |||||| ||||||||||||| |||||| | |||||| ||||||||||| |||      
T  47778158 caaaatatgcaggtccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttccttttt 47778059  T
Q  620 gttttgacaatgttgtgt 637  Q
    |||| ||||| |||||||    
T  47778058 gtttggacaaagttgtgt 47778041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 520 - 617
Target Start/End: Complemental strand, 47788280 - 47788183
Alignment:
Q  520 caaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctttt 617  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||| ||| || || ||||| ||||  ||||| | ||||||||||||||||||||||    
T  47788280 caaaataagcaggtccaatttcgtttagacccattattgaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttctttt 47788183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 552 - 724
Target Start/End: Original strand, 47760133 - 47760299
Alignment:
Q  552 aatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttg 651  Q
    |||||||| ||||||||||| ||||||||||| |  ||||      |||| ||||||||||||||| ||||| ||||| ||| ||| ||||||||  |||    
T  47760133 aatattgatcggtttgagtaacgcaacatgcagttatcat------accaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttg 47760226  T
Q  652 aatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtc 724  Q
    |||  ||||| ||| |  | ||| | | | |||| |||||||||||||| |||||||| ||||||||||||||    
T  47760227 aatcgttgagacaactgcggcaaacgtcgggtttaacatctcctctacagagtccaatggcgtttactttgtc 47760299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 6506438 - 6506501
Alignment:
Q  93 taaataccttgagaggaagtattgttttgtgcaaacggaggaggagttgagaaagatggcactg 156  Q
    ||||||||| ||||||||||| |||||| |||||| |||||||||| |||||| ||||||||||    
T  6506438 taaatacctggagaggaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactg 6506501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 47778456 - 47778382
Alignment:
Q  219 gtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttct 293  Q
    |||||| | ||||||||||| || |||||||||||||||||||| | |||||| ||||||||  |||||||||||    
T  47778456 gtttcaaacctcaaattacagctaggtctaacaattctagcaccaatcctatttttacaacatcttgaaatttct 47778382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 524 - 617
Target Start/End: Complemental strand, 47782062 - 47781969
Alignment:
Q  524 ataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctttt 617  Q
    |||||| || ||||||||||| || || ||||| ||||||| ||| || || ||||||||||  ||||| | ||||||||||||||||||||||    
T  47782062 ataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatgcatttctcatcctcgtaccatccaattgcttctttt 47781969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 219 - 322
Target Start/End: Complemental strand, 47788578 - 47788475
Alignment:
Q  219 gtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttctttgatagattgaaccaaacaatcat 318  Q
    |||||| | ||||||||||| || ||||||| |||||||||||| | ||||||| |||||||  |||||| |||    || ||||||| |||||||||||    
T  47788578 gtttcaaacctcaaattacagcttggtctaataattctagcaccaatcctattgctacaacatcttgaaacttcagcaatggattgaagcaaacaatcat 47788479  T
Q  319 caca 322  Q
    ||||    
T  47788478 caca 47788475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 552 - 629
Target Start/End: Complemental strand, 6523810 - 6523733
Alignment:
Q  552 aatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaa 629  Q
    ||||| ||||||| ||| || ||||||||||||| |||||| |  ||||| ||||||||||||||| ||||| |||||    
T  6523810 aatatggaacggtctgaataacgcaacatgcatttttcatcttcataccaaccaattgcttctttttggtttggacaa 6523733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 333 - 374
Target Start/End: Original strand, 47759914 - 47759955
Alignment:
Q  333 gacaaatcaggtgtgcattgagctagaccatatatggtttga 374  Q
    ||||||||||||||||| ||| | ||||||||||||||||||    
T  47759914 gacaaatcaggtgtgcactgaacaagaccatatatggtttga 47759955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 132; Significance: 4e-68; HSPs: 6)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 199 - 440
Target Start/End: Original strand, 587 - 834
Alignment:
Q  199 gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-acctatt-----gttacaacaatttgaaatttc 292  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||| |||||| |||||||     || |||||||||||  |||||    
T  587 gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacctattctattgtcacaacaatttgggatttc 686  T
Q  293 tttgatagattgaaccaaacaatcatcacaaaatgttttagacaaatcaggtgtgcattgagctagaccatatatggtttgattattatttggaccaacc 392  Q
    ||||||||||| | ||||||| |||||||| ||||||| |||||||||||||||||||||| | ||| || ||||||||||||||||||||||||||| |    
T  687 tttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatc 786  T
Q  393 tcatcacttcctacagcatatttaaggtcactgtcccctgatgcagct 440  Q
     ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  787 acatcacttcctacagcatatttaaggtcactttcccccgatgcagct 834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 199 - 440
Target Start/End: Original strand, 8240 - 8487
Alignment:
Q  199 gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-acctatt-----gttacaacaatttgaaatttc 292  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||| |||||| |||||||     || |||||||||||  |||||    
T  8240 gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacctattctattgtcacaacaatttgggatttc 8339  T
Q  293 tttgatagattgaaccaaacaatcatcacaaaatgttttagacaaatcaggtgtgcattgagctagaccatatatggtttgattattatttggaccaacc 392  Q
    ||||||||||| | ||||||| |||||||| ||||||| |||||||||||||||||||||| | ||| || ||||||||||||||||||||||||||| |    
T  8340 tttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatc 8439  T
Q  393 tcatcacttcctacagcatatttaaggtcactgtcccctgatgcagct 440  Q
     ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  8440 acatcacttcctacagcatatttaaggtcactttcccccgatgcagct 8487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 528 - 724
Target Start/End: Original strand, 928 - 1124
Alignment:
Q  528 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgac 627  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| |||||||||||||||||||||||| |||||||    
T  928 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgac 1027  T
Q  628 aatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtc 724  Q
    || |||||||||||||  |||||||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||||||||||    
T  1028 aaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtc 1124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #4
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 528 - 724
Target Start/End: Original strand, 8581 - 8778
Alignment:
Q  528 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcgg-ttttga 626  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| ||||||||||||||||||||||||  ||||||    
T  8581 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgtattttga 8680  T
Q  627 caatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtc 724  Q
    ||| |||||||||||||  |||||||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||||||||||    
T  8681 caaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtc 8778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 463 - 526
Alignment:
Q  93 taaataccttgagaggaagtattgttttgtgcaaacggaggaggagttgagaaagatggcactg 156  Q
    ||||||||| ||||||||||| |||||| |||||| |||||||||| |||||| ||||||||||    
T  463 taaatacctggagaggaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactg 526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 8116 - 8179
Alignment:
Q  93 taaataccttgagaggaagtattgttttgtgcaaacggaggaggagttgagaaagatggcactg 156  Q
    ||||||||| ||||||||||| |||||| |||||| |||||||||| |||||| ||||||||||    
T  8116 taaatacctggagaggaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactg 8179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 576 - 721
Target Start/End: Complemental strand, 722305 - 722161
Alignment:
Q  576 aacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaat 675  Q
    |||||||||| |||||| | |||| ||||||||||||||||||||||||   |||||||||||||||| ||| |||||| |||| ||||| |||||||||    
T  722305 aacatgcatttttcatcatcgtacaatccaattgcttcttttcggttttataaatgttgtgttagaaggacaattgaatatttgtggcaa-tttgacaat 722207  T
Q  676 cattgagtttgacatctcctctacatagtccaatcgcgtttacttt 721  Q
    ||||||| || |||||||||||||||||||||| | ||||||||||    
T  722206 cattgagcttaacatctcctctacatagtccaaccacgtttacttt 722161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 603 - 723
Target Start/End: Original strand, 28856512 - 28856632
Alignment:
Q  603 ccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacata 702  Q
    |||||||||||||||  |||| |||||| |||||||||||||||  ||||||| || || ||| |  | ||||||||  | || ||||||||||| ||||    
T  28856512 ccaattgcttcttttttgtttggacaattttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctgcata 28856611  T
Q  703 gtccaatcgcgtttactttgt 723  Q
     ||| || |||| ||||||||    
T  28856612 atcctatggcgtatactttgt 28856632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 605 - 655
Target Start/End: Original strand, 28831318 - 28831368
Alignment:
Q  605 aattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatt 655  Q
    ||||||||||||| ||||| |||||| |||||||||||||||  |||||||    
T  28831318 aattgcttctttttggtttggacaattttgtgttagaagaactcttgaatt 28831368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University