View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20634_low_10 (Length: 470)
Name: NF20634_low_10
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20634_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 10 - 454
Target Start/End: Complemental strand, 39101756 - 39101312
Alignment:
| Q |
10 |
ataattcttcacaactatttattcaatattttactattatggaattagttggtaattatatatatatgatcacttacctagctagctagaaaacttgaat |
109 |
Q |
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| T |
39101756 |
ataattcttcacaactatttattcaatattttcctattatggaattagttggtaattatatatatatgatcacttacctagctagctagaaaacttgaat |
39101657 |
T |
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| Q |
110 |
tatatgagatggtgaacatgttttcttatttctccatataaattaagagaaaagtgtgtttttaatatacctattaaaggagaccattgataatgtggtt |
209 |
Q |
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| T |
39101656 |
tatatgagatggtgaacatgttttcttatttctgcatataaattaagagaaaagtgtgtttttaatatacctattaaaggagaccattgataatgtggtt |
39101557 |
T |
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| Q |
210 |
gcattatataccaaactatatgcaagtagaagactaagaatccccattattggtgtaaaagaagagaactttaatatattatgactctaacaattcgcca |
309 |
Q |
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| T |
39101556 |
gcattatataccaaactatatgcaagtagaagactaagaatccccattattggtgtaaaagaagagaactttaatatattatgactctaacaattcgcca |
39101457 |
T |
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| Q |
310 |
aacattcttctttgatagttaggcgaaaatggcatagaacaaaactagtacttaattattgacattgcataactataataccagaagaacgacccaatta |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39101456 |
aacattcttctttgatagttaggcgaaaatggcatagaaccaaactagtacttaattattgacattgcataactataataccagaagaacgacccaatta |
39101357 |
T |
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| Q |
410 |
gtgaaataaaatcaatcaatacaggttgttgagtggtacatatat |
454 |
Q |
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| T |
39101356 |
gtgaaataaaatcaatcaatacaggttgttgagtggtacatatat |
39101312 |
T |
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