View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20634_low_11 (Length: 450)
Name: NF20634_low_11
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20634_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 5273720 - 5273457
Alignment:
| Q |
13 |
aagaatatgcttatgggctgcaaatgcatttagtggtggagatgtgcatttcacactcataatcctcgtcatcaatcctccttattcttctcatgcccta |
112 |
Q |
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| T |
5273720 |
aagaatatgcttatgggctgcaaatgcatttagtggtggagatgtgcatttcacactcataatcctcgtcatcaatcctccttattcttctcatgcccta |
5273621 |
T |
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| Q |
113 |
accatcccacacactccgatcttctaaataacctaaattcaaaccgatccaacggtggatatttaatttatttaaaaatacgacaaggattataagttat |
212 |
Q |
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| T |
5273620 |
accatcccacacactccgatcttctaaataacctaaattcaaactgatccaacggtggatatttaatttattttaaaatacgacgaggattataagttat |
5273521 |
T |
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| Q |
213 |
ggtatgttacgtaatattcctctcaaataaaatattctttttatcatttagaacaaaattaatt |
276 |
Q |
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| T |
5273520 |
ggtatgttacgtaatattcctctcaaataaaatattctttttatcatttaaaacaaaattaatt |
5273457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 268 - 432
Target Start/End: Complemental strand, 5273070 - 5272907
Alignment:
| Q |
268 |
aaattaattaccttgttttccgttttggccttttcaatttccctataaatacctttctctctcactatatcaactccaaaccaagaaagaaccaactttg |
367 |
Q |
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| T |
5273070 |
aaattaattac-ttgttttccgttttggctttttcaatttccctataaatacctttctctctcactatatcaactccaaaccaagaaagaaccaactttg |
5272972 |
T |
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| Q |
368 |
agagcagtgagagannnnnnncaggtcattgaaatttttcacattcactttctcacatctcaaag |
432 |
Q |
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| T |
5272971 |
agagcagtgagagatttttttcaggtcattgaaatttttcacattcactttctcacatctcaaag |
5272907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 432
Target Start/End: Complemental strand, 5276919 - 5276878
Alignment:
| Q |
391 |
ggtcattgaaatttttcacattcactttctcacatctcaaag |
432 |
Q |
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| T |
5276919 |
ggtcattcaaatttttcacattctctttctcacctctcaaag |
5276878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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