View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20634_low_12 (Length: 442)
Name: NF20634_low_12
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20634_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 23 - 433
Target Start/End: Complemental strand, 42910763 - 42910353
Alignment:
| Q |
23 |
atgatatgtgtttggtccatgataaggtaaggattgaacttgtttttcctatgtaacttttggactcaaatataaatgtattatattagtagatattaag |
122 |
Q |
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| T |
42910763 |
atgatatgtgtttggtccatgataaggtaaggattgaacttgtttttcctatgtaacttttggactcaaatataaatgtattagattagtagatattaag |
42910664 |
T |
|
| Q |
123 |
aattataagaacctttatatttaattgatgcatctgttgtactcgattcaatcgaagtttgctagatgtggaagaaacagaaagctcgaatcctttatta |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42910663 |
aattataagaacctttatatttaattgatgcatctgttgtactcgattcaatcgaagtttgctagatgtggaagaaacagaaagctcgaatcctttatta |
42910564 |
T |
|
| Q |
223 |
cattgtttgtcggggcacatgtcctccataacaggtcttttagctacaacttgcagttgcttttcaattttaatatcaagctctcttgacggaacatgca |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42910563 |
cattgtttgtcggggcacatgtcctccataacaggtcttttagctacaacttgcagttgcttttcaattttaatatcaagctctcttgatggaacatgca |
42910464 |
T |
|
| Q |
323 |
aggtgatcaatattagattatgtattaagaatcttgtaaaattttcatgtgcaatggtttaatgaagatgatacattaatttgtttatcataataggttt |
422 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42910463 |
aggtaatcaatattagattatgtattaagaatcttgtaaaattttcatgtgcaatggtttaatgaagatgatacattaatttgtttatcataataggttt |
42910364 |
T |
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| Q |
423 |
gggatttcatc |
433 |
Q |
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| T |
42910363 |
gggatttcatc |
42910353 |
T |
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