View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20634_low_13 (Length: 436)
Name: NF20634_low_13
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20634_low_13 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 168; Significance: 7e-90; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 7075 - 6879
Alignment:
| Q |
20 |
atccaccatcaacaccccatctattataactttttctattaagaattacgattgattcttggatataattgaatcaattaccactttcatccttttagta |
119 |
Q |
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| T |
7075 |
atccaccatcaacaccccatctattataagtttttctattaagaattaagattgattcttggatataattgaatcaattaccactttcatccttttagta |
6976 |
T |
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| Q |
120 |
agaacctttgccaaaacatcatatagacttctcaacaaaacaattgggcaaaaatcgtgtaatgagtgtggcatatttaccacgggattagggtaataa |
218 |
Q |
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| T |
6975 |
agcacctttgccaaaacatc--atagacttcccaacaaaacaattgggcgaaaatcgtgtaatgagtgtggcatatttaccacgggattagggtaataa |
6879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 335 - 428
Target Start/End: Complemental strand, 6861 - 6772
Alignment:
| Q |
335 |
caattgaacatagacttttgttgtcatatgcctagagcaccacttctttgatctcctcttccataaatagtcttgatatgatgacattcttttc |
428 |
Q |
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| T |
6861 |
caattgaacatagacttttgttgtcatacgcctagagcaccacttctttgatctcctcttcc----atagtcttgatatgatgacattcttttc |
6772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 7e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 23385393 - 23385589
Alignment:
| Q |
20 |
atccaccatcaacaccccatctattataactttttctattaagaattacgattgattcttggatataattgaatcaattaccactttcatccttttagta |
119 |
Q |
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| T |
23385393 |
atccaccatcaacaccccatctattataagtttttctattaagaattaagattgattcttggatataattgaatcaattaccactttcatccttttagta |
23385492 |
T |
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| Q |
120 |
agaacctttgccaaaacatcatatagacttctcaacaaaacaattgggcaaaaatcgtgtaatgagtgtggcatatttaccacgggattagggtaataa |
218 |
Q |
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| T |
23385493 |
agcacctttgccaaaacatc--atagacttcccaacaaaacaattgggcgaaaatcgtgtaatgagtgtggcatatttaccacgggattagggtaataa |
23385589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 335 - 428
Target Start/End: Original strand, 23385607 - 23385696
Alignment:
| Q |
335 |
caattgaacatagacttttgttgtcatatgcctagagcaccacttctttgatctcctcttccataaatagtcttgatatgatgacattcttttc |
428 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23385607 |
caattgaacatagacttttgttgtcatacgcctagagcaccacttctttgatctcctcttcc----atagtcttgatatgatgacattcttttc |
23385696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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