View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20634_low_17 (Length: 409)
Name: NF20634_low_17
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20634_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 25 - 393
Target Start/End: Complemental strand, 29810794 - 29810427
Alignment:
| Q |
25 |
tgaaatggatcaagagcctagtaaaagtatccaccacttggtcttttgtaggaacgggtagaatagtttgagggagaatttaaaacctccttgttctctc |
124 |
Q |
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| T |
29810794 |
tgaaatggatgaagagcctagtaaaagtatccaccacttggtcttttgtaggaacgggtagaatagtttgagggagaatttaaaacctccttgttctctc |
29810695 |
T |
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| Q |
125 |
atttatgtttttctattttgttgcaaactttttaaagtcgtatccaaatcaagaccaactaatattaggggttcaattacatcatccatttgcagaatcc |
224 |
Q |
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| T |
29810694 |
atttatgtttttctattttgttgcaaactttttaaagtcgtatccaaatcaagaccaactaatattaggggttcaattacaccatccatttgcagaaccc |
29810595 |
T |
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| Q |
225 |
atttaaatccaatccaaagttgtataaagataagttcaccgaaaattgaaaccaagaaaattgaatctttcggaaaaacatattccaaagtccataacta |
324 |
Q |
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| T |
29810594 |
atttaaatccagtccaaagttgtataaagattagttcaccg-aaattgaaaccaagaaaattgaatctatcggaaaaacatattccaaagtccataacca |
29810496 |
T |
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| Q |
325 |
acttcactcgaattaccttataatttgattcatttaaaagtttagaaactttagattagttcagtatgt |
393 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||| |
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| T |
29810495 |
acttcactcgaattaccttataatttgattcatttaacaatttaaaaactttagattagttcagtatgt |
29810427 |
T |
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