View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20634_low_2 (Length: 605)
Name: NF20634_low_2
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20634_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 14 - 340
Target Start/End: Complemental strand, 47197808 - 47197482
Alignment:
| Q |
14 |
atatccacctttgattctgttttccaatataaacagttattacattatagttcaaaatatttacttagttaaaaatgttattacgaatattaataatcaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47197808 |
atatccacctttgattctgttttccaatataaacagttattacattatagttcaaaatatttacttagttaaaaatgttattacgaatattattaatcaa |
47197709 |
T |
|
| Q |
114 |
atttaacttactttgatgtaaaccagttgacgaggtttgctatgaaaattcctatggtaatgttcagctgaaacataatgttaagtgctccacgtattct |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47197708 |
atttaacttactttgatgtaaaccagttgacaaggtttgctatgaaaattcctatggtaatattcagctgaaacataatgttaagtgctccacgaattct |
47197609 |
T |
|
| Q |
214 |
tgttggtgctatctcagatagaaacactggcacagcctgttttgtcacaattgcaattgatttagaatcagcaacattaaatttttaatgtgacaatgca |
313 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
47197608 |
tgttggtgctatttcagatagaaaaactggcacagcctgttttgtcaaaattgcagttgatttagaatcagcaacattaaacttttaatgtgacaatgca |
47197509 |
T |
|
| Q |
314 |
tgtctaattttctgatgaaaatatgga |
340 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
47197508 |
tgtctaattttctgatgaaaatatgga |
47197482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 364 - 591
Target Start/End: Complemental strand, 47197448 - 47197221
Alignment:
| Q |
364 |
aggacctggttggcaaaaccaactccgcaaccaagtaagattctgccaaaaatgaggaggataagtttccctgccgaggcacttaagacagtgccaacaa |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47197448 |
aggacctggttggcaaaaccaactccgcaaccaagtaagattctgccaaaaatgaggaggataagtttccctgctgaggcacttaagacagtgccaacaa |
47197349 |
T |
|
| Q |
464 |
tgaacaaaattccagcaagcaacatagtttgtttgcgtcctagctttctggttacaggggatgcgatcatggaagctaccaaggccgcaaggtaaagaga |
563 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47197348 |
tgaacaaaattccagcaagcaacatagtttgtttgcgtcctagctttctggttacaggggatgcgatcatggaagctaccaaggccgcaaggtaaagaga |
47197249 |
T |
|
| Q |
564 |
tgatgtgaacaattgaagcttctgattg |
591 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
47197248 |
tgatgtgaacaattgaagcttctgattg |
47197221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 85 - 296
Target Start/End: Complemental strand, 47184858 - 47184647
Alignment:
| Q |
85 |
aaaatgttattacgaatattaataatcaaatttaacttactttgatgtaaaccagttgacgaggtttgctatgaaaattcctatggtaatgttcagctga |
184 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47184858 |
aaaatgttattatgaagattattaatcaaatttaacttactttgatgtaaaccagttgacaaggtttgctatgaaaattcctatggtaatgttcagctga |
47184759 |
T |
|
| Q |
185 |
aacataatgttaagtgctccacgtattcttgttggtgctatctcagatagaaacactggcacagcctgttttgtcacaattgcaattgatttagaatcag |
284 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||| | |||||||| |
|
|
| T |
47184758 |
aacataatgttaagtgctccacgaattcttgttggtgctatttcagatagaaaaactggcacagcctgttttgtcaaaattgcaattagtcaagaatcag |
47184659 |
T |
|
| Q |
285 |
caacattaaatt |
296 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
47184658 |
caactttaaatt |
47184647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 366 - 582
Target Start/End: Complemental strand, 47184409 - 47184193
Alignment:
| Q |
366 |
gacctggttggcaaaaccaactccgcaaccaagtaagattctgccaaaaatgaggaggataagtttccctgccgaggcacttaagacagtgccaacaatg |
465 |
Q |
| |
|
|||||| ||||| |||||||| || |||||||||| ||||||||||| ||||| |||| |||| | ||||| | ||||||||| |||||||| ||||| |
|
|
| T |
47184409 |
gacctgattggcgaaaccaacaccacaaccaagtatgattctgccaagaatgatgaggctaagggtgcctgctaaagcacttaaggcagtgccagcaatg |
47184310 |
T |
|
| Q |
466 |
aacaaaattccagcaagcaacatagtttgtttgcgtcctagctttctggttacaggggatgcgatcatggaagctaccaaggccgcaaggtaaagagatg |
565 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||| |||||||| ||||| |||||||| |||||||| ||||||||||| || | ||||||||| | |
|
|
| T |
47184309 |
aagaaaattccagcaagcaacatagtaagtttgcgtccaagctttctagttaccggggatgcaatcatggaggctaccaaggcagcgatgtaaagagaag |
47184210 |
T |
|
| Q |
566 |
atgtgaacaattgaagc |
582 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
47184209 |
atgtgaacaattgaagc |
47184193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 419
Target Start/End: Original strand, 750847 - 750899
Alignment:
| Q |
367 |
acctggttggcaaaaccaactccgcaaccaagtaagattctgccaaaaatgag |
419 |
Q |
| |
|
||||| || ||||||||||| || |||||||||||||||||||||| |||||| |
|
|
| T |
750847 |
acctgattagcaaaaccaacaccacaaccaagtaagattctgccaacaatgag |
750899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University