View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20634_low_22 (Length: 396)

Name: NF20634_low_22
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20634_low_22
NF20634_low_22
[»] chr4 (11 HSPs)
chr4 (6-383)||(40597203-40597581)
chr4 (259-383)||(37340117-37340240)
chr4 (256-307)||(13849348-13849399)
chr4 (255-318)||(46343320-46343383)
chr4 (260-309)||(50981781-50981830)
chr4 (274-318)||(22717108-22717152)
chr4 (274-318)||(22988065-22988109)
chr4 (271-335)||(35273363-35273427)
chr4 (271-313)||(3802990-3803032)
chr4 (281-318)||(33530236-33530273)
chr4 (278-306)||(29848552-29848580)
[»] chr1 (11 HSPs)
chr1 (259-380)||(32947615-32947736)
chr1 (272-369)||(49773477-49773574)
chr1 (271-382)||(236577-236686)
chr1 (259-383)||(11080970-11081094)
chr1 (261-352)||(4628004-4628095)
chr1 (259-315)||(8312605-8312661)
chr1 (258-310)||(43837082-43837134)
chr1 (264-318)||(11797473-11797526)
chr1 (279-385)||(44836125-44836231)
chr1 (274-310)||(5282650-5282686)
chr1 (271-307)||(43841863-43841899)
[»] chr8 (14 HSPs)
chr8 (258-318)||(25899256-25899316)
chr8 (259-318)||(31291214-31291273)
chr8 (261-317)||(12320984-12321040)
chr8 (268-315)||(12631934-12631981)
chr8 (268-307)||(14258308-14258347)
chr8 (268-310)||(11565004-11565046)
chr8 (271-310)||(27849824-27849863)
chr8 (271-318)||(36442761-36442808)
chr8 (278-307)||(1223534-1223563)
chr8 (271-312)||(16816833-16816874)
chr8 (271-312)||(28372481-28372522)
chr8 (277-318)||(33128239-33128280)
chr8 (277-370)||(40418141-40418234)
chr8 (262-318)||(34906509-34906565)
[»] chr3 (7 HSPs)
chr3 (255-318)||(33095969-33096032)
chr3 (259-383)||(4659533-4659657)
chr3 (260-310)||(47665292-47665342)
chr3 (271-308)||(7251623-7251660)
chr3 (261-318)||(54923483-54923540)
chr3 (273-305)||(26100520-26100552)
chr3 (268-312)||(38085811-38085854)
[»] chr7 (5 HSPs)
chr7 (274-375)||(36251660-36251761)
chr7 (271-318)||(24333348-24333395)
chr7 (271-310)||(47086382-47086421)
chr7 (261-383)||(12961833-12961955)
chr7 (271-308)||(46715774-46715811)
[»] chr6 (4 HSPs)
chr6 (275-317)||(14688069-14688111)
chr6 (326-375)||(19225828-19225877)
chr6 (278-318)||(9297771-9297811)
chr6 (278-310)||(9727509-9727541)
[»] chr5 (3 HSPs)
chr5 (277-319)||(1612386-1612428)
chr5 (271-375)||(11408380-11408484)
chr5 (254-318)||(13538260-13538324)
[»] scaffold0027 (1 HSPs)
scaffold0027 (261-318)||(19387-19444)
[»] chr2 (5 HSPs)
chr2 (271-383)||(39417450-39417561)
chr2 (277-324)||(9993183-9993230)
chr2 (271-318)||(30854809-30854856)
chr2 (268-306)||(16382199-16382237)
chr2 (277-318)||(10720462-10720503)
[»] scaffold1067 (1 HSPs)
scaffold1067 (261-318)||(2935-2992)


Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 6 - 383
Target Start/End: Original strand, 40597203 - 40597581
Alignment:
Q  6 aaaccatactaatataaatacaatttatctttaggcaaagagacaaattattaattgttgtggggaagctaagcgtgctgcagggagattggactaatac 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40597203 aaaccatactaatataaatacaatttatctttaggcaaagagacaaattattaattgttgtggggaagctaagcgtgctgcagggagattggactaatac 40597302  T
Q  106 ccgtcgttcagcataaaaccaaattaattggcaaataccattcaaatgtaaatatgacttactacctttgagagttgttttttaggtccagcaaattaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40597303 ccgtcgttcagcataaaaccaaattaattggcaaataccattcaaatgtaaatatgacttactacctttgagagttgttttttaggtccagcaaattaaa 40597402  T
Q  206 aactgataatgacctcagaaaattattacaaagatattaagattaaacg-ttttttgtctcaaaaatcctaactcaactgacaaaaatgttgaaattgtt 304  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||| ||||||||||||||||||    
T  40597403 aactgataatgacctcagaatattattacaaagatattaagattaaacgtttttttgtctcataaatcctaattcaactgataaaaatgttgaaattgtt 40597502  T
Q  305 aggccgaacgtcatagtcggagtttgaatcctgatatcttcactttatatgtataagtttatgatgattttttcatctc 383  Q
    ||||||||| |||| ||||| |||||||||||  || ||||| | ||| |||||||||||||||||||||| |||||||    
T  40597503 aggccgaacatcatggtcggggtttgaatcctagtaccttcattctatgtgtataagtttatgatgattttgtcatctc 40597581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 383
Target Start/End: Complemental strand, 37340240 - 37340117
Alignment:
Q  259 ttgtctcaaaaatcctaactcaactgacaaaaatgttgaaattgttaggccgaacgtcatagtcggagtttgaatcctgatatcttcactttatatgtat 358  Q
    |||||||| || |||||  |||||||| |||||||| |||||||||||||||||||||||  || | ||| ||| |  | ||||| |||||| | ||| |    
T  37340240 ttgtctcataagtcctagttcaactgataaaaatgtcgaaattgttaggccgaacgtcatgatcag-gttcgaaccacggtatctccactttgtgtgtgt 37340142  T
Q  359 aagtttatgatgattttttcatctc 383  Q
     |||||||||||||||| |||||||    
T  37340141 gagtttatgatgattttgtcatctc 37340117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 307
Target Start/End: Original strand, 13849348 - 13849399
Alignment:
Q  256 tttttgtctcaaaaatcctaactcaactgacaaaaatgttgaaattgttagg 307  Q
    ||||||||||| || ||||| |||||||||||||||||| ||||||||||||    
T  13849348 tttttgtctcataagtcctagctcaactgacaaaaatgtcgaaattgttagg 13849399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 46343320 - 46343383
Alignment:
Q  255 ttttttgtctcaaaaatcctaactcaactgacaaaaatgttgaaattgttaggccgaacgtcat 318  Q
    |||||||||||| || ||||| |||||||||||||| ||  ||||||||||||||| |||||||    
T  46343320 ttttttgtctcataagtcctagctcaactgacaaaagtgccgaaattgttaggccggacgtcat 46343383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 50981830 - 50981781
Alignment:
Q  260 tgtctcaaaaatcctaactcaactgacaaaaatgttgaaattgttaggcc 309  Q
    ||||||| || |||||||||||||||||||||||  ||||||||||||||    
T  50981830 tgtctcataagtcctaactcaactgacaaaaatgccgaaattgttaggcc 50981781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 22717108 - 22717152
Alignment:
Q  274 taactcaactgacaaaaatgttgaaattgttaggccgaacgtcat 318  Q
    ||||||||| ||||||||||| |||||||||||| ||||||||||    
T  22717108 taactcaaccgacaaaaatgtcgaaattgttaggtcgaacgtcat 22717152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 318
Target Start/End: Complemental strand, 22988109 - 22988065
Alignment:
Q  274 taactcaactgacaaaaatgttgaaattgttaggccgaacgtcat 318  Q
    ||||||||| ||||||||||| |||||||||||| ||||||||||    
T  22988109 taactcaaccgacaaaaatgtcgaaattgttaggtcgaacgtcat 22988065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 35273427 - 35273363
Alignment:
Q  271 tcctaactcaactgacaaaaatgttgaaattgttaggccgaacgtcatagtcggagtttgaatcc 335  Q
    ||||| |||||||| ||||||||| ||||||||||||||| | | |||  |||||||||||||||    
T  35273427 tcctagctcaactggcaaaaatgtcgaaattgttaggccgtatgccatgatcggagtttgaatcc 35273363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 313
Target Start/End: Complemental strand, 3803032 - 3802990
Alignment:
Q  271 tcctaactcaactgacaaaaatgttgaaattgttaggccgaac 313  Q
    |||||||||||||||||||||||  |||||| |||||||||||    
T  3803032 tcctaactcaactgacaaaaatgccgaaattattaggccgaac 3802990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 33530236 - 33530273
Alignment:
Q  281 actgacaaaaatgttgaaattgttaggccgaacgtcat 318  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  33530236 actgataaaaatgttgaaattgttaggccggacgtcat 33530273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 306
Target Start/End: Complemental strand, 29848580 - 29848552
Alignment:
Q  278 tcaactgacaaaaatgttgaaattgttag 306  Q
    |||||||||||||||||||||||||||||    
T  29848580 tcaactgacaaaaatgttgaaattgttag 29848552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 380
Target Start/End: Original strand, 32947615 - 32947736
Alignment:
Q  259 ttgtctcaaaaatcctaactcaactgacaaaaatgttgaaattgttaggccgaacgtcatagtcggagtttgaatcctgatatcttcactttatatgtat 358  Q
    |||||||| || ||||| ||||||||||||||||||| |||||||||||||||||||| |   ||||||| ||| || || |||| |||||||| ||| |    
T  32947615 ttgtctcataagtcctagctcaactgacaaaaatgttaaaattgttaggccgaacgtcttgaccggagttcgaaccccgacatctccactttatgtgtgt 32947714  T
Q  359 aagtttatgatgattttttcat 380  Q
     ||||||||||| |||| ||||    
T  32947715 gagtttatgatggttttgtcat 32947736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 369
Target Start/End: Complemental strand, 49773574 - 49773477
Alignment:
Q  272 cctaactcaactgacaaaaatgttgaaattgttaggccgaacgtcatagtcggagtttgaatcctgatatcttcactttatatgtataagtttatgat 369  Q
    |||| ||||| | |||||||||||||||||||||||||||||||||||  | ||||| ||| || |||| ||  ||||| | ||| ||||||||||||    
T  49773574 cctagctcaattaacaaaaatgttgaaattgttaggccgaacgtcataaccagagttcgaaccccgatacctctactttgtgtgtgtaagtttatgat 49773477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 382
Target Start/End: Original strand, 236577 - 236686
Alignment:
Q  271 tcctaactcaactgacaaaaatgttgaaattgttaggccgaacgtcatagtcggagtttgaatcctgatatcttcactttatatgtataagtttatgatg 370  Q
    ||||| |||||||||||||||||| ||||||||||||||| |||||||   ||| ||| ||| || | || ||||||||  ||||| | |||||||||||    
T  236577 tcctacctcaactgacaaaaatgtcgaaattgttaggccggacgtcatgaccggggttcgaaccccggtaccttcactt--tatgtgtgagtttatgatg 236674  T
Q  371 attttttcatct 382  Q
    | ||| ||||||    
T  236675 actttgtcatct 236686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 383
Target Start/End: Complemental strand, 11081094 - 11080970
Alignment:
Q  259 ttgtctcaaaaatcctaactcaactgacaaaaatgttgaaattgttaggccgaacgtcatagtcggagtttgaatcctgatatcttcactttatatgtat 358  Q
    |||||||| || || ||||||||||| ||||||||||||||||| ||||||| |||| ||   ||| |||  || || |||| || |||||||| |||||    
T  11081094 ttgtctcataagtcttaactcaactggcaaaaatgttgaaattgctaggccggacgttatgaccggggttcaaaccccgatacctccactttatgtgtat 11080995  T
Q  359 aagtttatgatgattttttcatctc 383  Q
     ||| ||||||| |||| |||||||    
T  11080994 gagtatatgatggttttgtcatctc 11080970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 352
Target Start/End: Complemental strand, 4628095 - 4628004
Alignment:
Q  261 gtctcaaaaatcctaactcaactgacaaaaatgttgaaattgttaggccgaacgtcatagtcggagtttgaatcctgatatcttcactttat 352  Q
    |||||| || ||||| ||||||||||||||||| |||||||||||||||  |||||||| |||  |||||||  | | || |||||||||||    
T  4628095 gtctcataagtcctagctcaactgacaaaaatgctgaaattgttaggccagacgtcataatcgaggtttgaactccggtaccttcactttat 4628004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 8312661 - 8312605
Alignment:
Q  259 ttgtctcaaaaatcctaactcaactgacaaaaatgttgaaattgttaggccgaacgt 315  Q
    |||||||| || |||||  ||||| ||||||||||| ||||||||||||||||||||    
T  8312661 ttgtctcataagtcctagttcaacggacaaaaatgtcgaaattgttaggccgaacgt 8312605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 43837082 - 43837134
Alignment:
Q  258 tttgtctcaaaaatcctaactcaactgacaaaaatgttgaaattgttaggccg 310  Q
    ||||||||| |||||||| |||||||| ||||||||| | |||||||||||||    
T  43837082 tttgtctcataaatcctagctcaactggcaaaaatgtcggaattgttaggccg 43837134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 318
Target Start/End: Complemental strand, 11797526 - 11797473
Alignment:
Q  264 tcaaaaatcctaactcaactgacaaaaatgttgaaattgttaggccgaacgtcat 318  Q
    |||||| |||||||||||||| ||||| ||| ||||||||||||||||| |||||    
T  11797526 tcaaaagtcctaactcaactggcaaaa-tgtcgaaattgttaggccgaatgtcat 11797473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 385
Target Start/End: Complemental strand, 44836231 - 44836125
Alignment:
Q  279 caactgacaaaaatgttgaaattgttaggccgaacgtcatagtcggagtttgaatcctgatatcttcactttatatgtataagtttatgatgattttttc 378  Q
    |||||| ||||||| |  ||||||||||| || |||||||  |||| ||| ||| || | ||||| |||||||||||| | |||||||||||  ||| ||    
T  44836231 caactggcaaaaatatcaaaattgttaggtcggacgtcatgatcggggttcgaaccccggtatctccactttatatgtgtgagtttatgatggctttgtc 44836132  T
Q  379 atctcat 385  Q
    |||||||    
T  44836131 atctcat 44836125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 5282650 - 5282686
Alignment:
Q  274 taactcaactgacaaaaatgttgaaattgttaggccg 310  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  5282650 taactcaactgacaaaaatgtttaaattgttatgccg 5282686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 43841899 - 43841863
Alignment:
Q  271 tcctaactcaactgacaaaaatgttgaaattgttagg 307  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  43841899 tcctaactcaactgataaaaatgtcgaaattgttagg 43841863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 25899316 - 25899256
Alignment:
Q  258 tttgtctcaaaaatcctaactcaactgacaaaaatgttgaaattgttaggccgaacgtcat 318  Q
    |||||||||||  |||||||||||||||||||||||  ||||||||||||||| |||||||    
T  25899316 tttgtctcaaatctcctaactcaactgacaaaaatgccgaaattgttaggccggacgtcat 25899256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 318
Target Start/End: Original strand, 31291214 - 31291273
Alignment:
Q  259 ttgtctcaaaaatcctaactcaactgacaaaaatgttgaaattgttaggccgaacgtcat 318  Q
    |||||||| |||||||| || ||||||||||||||  |||||||||||||||||||||||    
T  31291214 ttgtctcataaatcctagcttaactgacaaaaatgccgaaattgttaggccgaacgtcat 31291273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 12320984 - 12321040
Alignment:
Q  261 gtctcaaaaatcctaactcaactgacaaaaatgttgaaattgttaggccgaacgtca 317  Q
    |||||| || ||||| ||||||||||||||||||  |||||||||||||||||||||    
T  12320984 gtctcataagtcctagctcaactgacaaaaatgtcaaaattgttaggccgaacgtca 12321040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 315
Target Start/End: Complemental strand, 12631981 - 12631934
Alignment:
Q  268 aaatcctaactcaactgacaaaaatgttgaaattgttaggccgaacgt 315  Q
    |||||||||||||| ||||||||||||||||||||||| || ||||||    
T  12631981 aaatcctaactcaattgacaaaaatgttgaaattgttaagctgaacgt 12631934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 14258308 - 14258347
Alignment:
Q  268 aaatcctaactcaactgacaaaaatgttgaaattgttagg 307  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  14258308 aaatcttaactcaactgacaaaaatgttgaaattgttagg 14258347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 310
Target Start/End: Original strand, 11565004 - 11565046
Alignment:
Q  268 aaatcctaactcaactgacaaaaatgttgaaattgttaggccg 310  Q
    ||||||||||||||||| |||||||| ||||||||||||||||    
T  11565004 aaatcctaactcaactggcaaaaatgctgaaattgttaggccg 11565046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 310
Target Start/End: Complemental strand, 27849863 - 27849824
Alignment:
Q  271 tcctaactcaactgacaaaaatgttgaaattgttaggccg 310  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  27849863 tcctaactcaactgacaaaaatgccgaaattgttaggccg 27849824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 36442808 - 36442761
Alignment:
Q  271 tcctaactcaactgacaaaaatgttgaaattgttaggccgaacgtcat 318  Q
    ||||||||||||||| |||||||  ||||||||||||||| |||||||    
T  36442808 tcctaactcaactgataaaaatgccgaaattgttaggccggacgtcat 36442761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 307
Target Start/End: Original strand, 1223534 - 1223563
Alignment:
Q  278 tcaactgacaaaaatgttgaaattgttagg 307  Q
    ||||||||||||||||||||||||||||||    
T  1223534 tcaactgacaaaaatgttgaaattgttagg 1223563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 16816833 - 16816874
Alignment:
Q  271 tcctaactcaactgacaaaaatgttgaaattgttaggccgaa 312  Q
    ||||| |||||||| ||||||||| |||||||||||||||||    
T  16816833 tcctagctcaactggcaaaaatgtcgaaattgttaggccgaa 16816874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 28372481 - 28372522
Alignment:
Q  271 tcctaactcaactgacaaaaatgttgaaattgttaggccgaa 312  Q
    ||||| ||| ||||||||| ||||||||||||||||||||||    
T  28372481 tcctagctctactgacaaagatgttgaaattgttaggccgaa 28372522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 33128280 - 33128239
Alignment:
Q  277 ctcaactgacaaaaatgttgaaattgttaggccgaacgtcat 318  Q
    |||||||  |||||||| ||||||||||||||||||||||||    
T  33128280 ctcaactagcaaaaatgctgaaattgttaggccgaacgtcat 33128239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 370
Target Start/End: Original strand, 40418141 - 40418234
Alignment:
Q  277 ctcaactgacaaaaatgttgaaattgttaggccgaacgtcatagtcggagtttgaatcctgatatcttcactttatatgtataagtttatgatg 370  Q
    ||||||||  ||||||| |||||||||||||||  |||||||   ||||||| ||| || |||| || |||||||| ||| | |||||||||||    
T  40418141 ctcaactggtaaaaatgctgaaattgttaggccagacgtcatgaccggagttcgaaccccgatacctccactttatgtgtgtgagtttatgatg 40418234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 34906565 - 34906509
Alignment:
Q  262 tctcaaaaatcctaactcaactgacaaaaatgttgaaattgttaggccgaacgtcat 318  Q
    ||||| || ||||| ||||||||||||||||| | ||||| || |||||||||||||    
T  34906565 tctcataagtcctagctcaactgacaaaaatgctaaaattctttggccgaacgtcat 34906509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 33095969 - 33096032
Alignment:
Q  255 ttttttgtctcaaaaatcctaactcaactgacaaaaatgttgaaattgttaggccgaacgtcat 318  Q
    ||||||||| || || |||||||||||||| ||||||||  |||||||||||||||||||||||    
T  33095969 ttttttgtcacataagtcctaactcaactggcaaaaatgacgaaattgttaggccgaacgtcat 33096032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 383
Target Start/End: Original strand, 4659533 - 4659657
Alignment:
Q  259 ttgtctcaaaaatcctaactcaactgacaaaaatgttgaaattgttaggccgaacgtcatagtcggagtttgaatcctgatatcttcactttatatgtat 358  Q
    |||||||| || || || ||||||||||||||||| |||||||  ||||||| | ||| |  |||| ||| ||| ||||||| || |||||||| ||| |    
T  4659533 ttgtctcataagtcatagctcaactgacaaaaatgctgaaattaataggccggatgtcttgatcggtgttcgaaccctgatacctccactttatgtgtgt 4659632  T
Q  359 aagtttatgatgattttttcatctc 383  Q
     ||||||| |||| |||||||||||    
T  4659633 gagtttataatgactttttcatctc 4659657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 310
Target Start/End: Complemental strand, 47665342 - 47665292
Alignment:
Q  260 tgtctcaaaaatcctaactcaactgacaaaaatgttgaaattgttaggccg 310  Q
    ||||||| || |||||||||||| ||||||||||| |||||||||||||||    
T  47665342 tgtctcataactcctaactcaaccgacaaaaatgtcgaaattgttaggccg 47665292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 7251660 - 7251623
Alignment:
Q  271 tcctaactcaactgacaaaaatgttgaaattgttaggc 308  Q
    |||||||||||||||||||||||  |||||||||||||    
T  7251660 tcctaactcaactgacaaaaatgccgaaattgttaggc 7251623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 54923483 - 54923540
Alignment:
Q  261 gtctcaaaaatcctaactcaactgacaaaaatgttgaaattgttaggccgaacgtcat 318  Q
    |||||| || ||||||||||||||  |||||||| |||||||||||| || |||||||    
T  54923483 gtctcataagtcctaactcaactggtaaaaatgtcgaaattgttaggtcggacgtcat 54923540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 305
Target Start/End: Original strand, 26100520 - 26100552
Alignment:
Q  273 ctaactcaactgacaaaaatgttgaaattgtta 305  Q
    ||||||||||||||||||||||| |||||||||    
T  26100520 ctaactcaactgacaaaaatgttaaaattgtta 26100552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 38085811 - 38085854
Alignment:
Q  268 aaatcctaactcaactgacaaaaatgttgaaattgttaggccgaa 312  Q
    |||||||| |||||||||||||| ||| |||||||||||||||||    
T  38085811 aaatcctagctcaactgacaaaa-tgtcgaaattgttaggccgaa 38085854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 375
Target Start/End: Original strand, 36251660 - 36251761
Alignment:
Q  274 taactcaactgacaaaaatgttgaaattgttaggccgaacgtcatagtcggagtttgaatcctgatatcttcactttatatgtataagtttatgatgatt 373  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| | ||  ||| ||| || | ||| | |||||||| ||| | ||||||||||| ||    
T  36251660 taactcaactgacaaaaatgctgaaattgttaggccggacgtcatggccgaggttcgaaccccggtatttccactttatgtgtgtgagtttatgatggtt 36251759  T
Q  374 tt 375  Q
    ||    
T  36251760 tt 36251761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 24333348 - 24333395
Alignment:
Q  271 tcctaactcaactgacaaaaatgttgaaattgttaggccgaacgtcat 318  Q
    ||||| ||||||| |||||||||| |||||||||||||||| ||||||    
T  24333348 tcctagctcaacttacaaaaatgtcgaaattgttaggccgagcgtcat 24333395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 310
Target Start/End: Complemental strand, 47086421 - 47086382
Alignment:
Q  271 tcctaactcaactgacaaaaatgttgaaattgttaggccg 310  Q
    ||||| |||||||||||||||||| |||||||||||||||    
T  47086421 tcctagctcaactgacaaaaatgtcgaaattgttaggccg 47086382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 383
Target Start/End: Complemental strand, 12961955 - 12961833
Alignment:
Q  261 gtctcaaaaatcctaactcaactgacaaaaatgttgaaattgttaggccgaacgtcatagtcggagtttgaatcctgatatcttcactttatatgtataa 360  Q
    |||||| || |||||||||||||   |||||||| ||||||||||||||| || ||||  |||||||| ||| |  | || ||||| ||| | ||| | |    
T  12961955 gtctcataagtcctaactcaactagtaaaaatgtagaaattgttaggccggacatcatgatcggagttcgaacctcggtaccttcaatttgtgtgtgtga 12961856  T
Q  361 gtttatgatgattttttcatctc 383  Q
    ||||||||||| ||| |||||||    
T  12961855 gtttatgatgactttgtcatctc 12961833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 46715811 - 46715774
Alignment:
Q  271 tcctaactcaactgacaaaaatgttgaaattgttaggc 308  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  46715811 tcctaactcaactgaaaaaaatgtcgaaattgttaggc 46715774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 317
Target Start/End: Complemental strand, 14688111 - 14688069
Alignment:
Q  275 aactcaactgacaaaaatgttgaaattgttaggccgaacgtca 317  Q
    ||||||||| ||||||||||||||||||||| |||||||||||    
T  14688111 aactcaactaacaaaaatgttgaaattgttatgccgaacgtca 14688069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 375
Target Start/End: Original strand, 19225828 - 19225877
Alignment:
Q  326 gtttgaatcctgatatcttcactttatatgtataagtttatgatgatttt 375  Q
    |||||||||| ||||  |||||||||||||| | ||||||||||||||||    
T  19225828 gtttgaatccggatacattcactttatatgtgtgagtttatgatgatttt 19225877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 9297771 - 9297811
Alignment:
Q  278 tcaactgacaaaaatgttgaaattgttaggccgaacgtcat 318  Q
    ||||||||||||||||| ||||||||||||||  |||||||    
T  9297771 tcaactgacaaaaatgtcgaaattgttaggccagacgtcat 9297811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 9727509 - 9727541
Alignment:
Q  278 tcaactgacaaaaatgttgaaattgttaggccg 310  Q
    ||||||||||||||||| |||||||||||||||    
T  9727509 tcaactgacaaaaatgtcgaaattgttaggccg 9727541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 319
Target Start/End: Original strand, 1612386 - 1612428
Alignment:
Q  277 ctcaactgacaaaaatgttgaaattgttaggccgaacgtcata 319  Q
    |||||||||||||||||||||||||||||||||| || |||||    
T  1612386 ctcaactgacaaaaatgttgaaattgttaggccggacatcata 1612428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 375
Target Start/End: Original strand, 11408380 - 11408484
Alignment:
Q  271 tcctaactcaactgacaaaaatgttgaaattgttaggccgaacgtcatagtcggagtttgaatcctgatatcttcactttatatgtataagtttatgatg 370  Q
    ||||| |||||||  |||||||||  ||||||||||  ||||||||||| |||||||| ||||||   || ||||||||| | ||| | |||||||||||    
T  11408380 tcctagctcaactagcaaaaatgtcaaaattgttagatcgaacgtcataatcggagttcgaatcccagtaccttcactttgtgtgtgtgagtttatgatg 11408479  T
Q  371 atttt 375  Q
     ||||    
T  11408480 gtttt 11408484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 13538324 - 13538260
Alignment:
Q  254 gttttttgtctcaaaaatcctaactcaactgacaaaaatgttgaaattgttaggccgaacgtcat 318  Q
    |||| ||||| || || ||||||||||||| |||||||| | ||||||||||||| | |||||||    
T  13538324 gtttgttgtcccataagtcctaactcaacttacaaaaatatcgaaattgttaggctggacgtcat 13538260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 318
Target Start/End: Complemental strand, 19444 - 19387
Alignment:
Q  261 gtctcaaaaatcctaactcaactgacaaaaatgttgaaattgttaggccgaacgtcat 318  Q
    |||||| || |||||  ||||||| ||||||||||||||||||||||||| |||||||    
T  19444 gtctcataagtcctagttcaactggcaaaaatgttgaaattgttaggccggacgtcat 19387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 383
Target Start/End: Original strand, 39417450 - 39417561
Alignment:
Q  271 tcctaactcaactgacaaaaatgttgaaattgttaggccgaacgtcatagtcggagtttgaatcctgatatcttcactttatatgtataagtttatgatg 370  Q
    ||||| ||||||||||||||||   ||||||||||||||| | ||||| | ||| ||| |||  | ||||||| |||||||| ||| | |||||||||||    
T  39417450 tcctagctcaactgacaaaaataccgaaattgttaggccggatgtcat-gacggggttcgaactccgatatctccactttatgtgtgtgagtttatgatg 39417548  T
Q  371 attttttcatctc 383  Q
    | ||| |||||||    
T  39417549 actttatcatctc 39417561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 9993183 - 9993230
Alignment:
Q  277 ctcaactgacaaaaatgttgaaattgttaggccgaacgtcatagtcgg 324  Q
    |||||||||||||||||| |||||||||| |||| |||||||| ||||    
T  9993183 ctcaactgacaaaaatgtcgaaattgttaagccggacgtcataatcgg 9993230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 30854856 - 30854809
Alignment:
Q  271 tcctaactcaactgacaaaaatgttgaaattgttaggccgaacgtcat 318  Q
    ||||||||||||||| |||||||| |||||||||||| |||| |||||    
T  30854856 tcctaactcaactgataaaaatgtcgaaattgttaggacgaatgtcat 30854809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 16382199 - 16382237
Alignment:
Q  268 aaatcctaactcaactgacaaaaatgttgaaattgttag 306  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  16382199 aaatcctaactcaactgataaaaatgtcgaaattgttag 16382237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 318
Target Start/End: Original strand, 10720462 - 10720503
Alignment:
Q  277 ctcaactgacaaaaatgttgaaattgttaggccgaacgtcat 318  Q
    |||||||| |||||||||| |||||||||||||||| |||||    
T  10720462 ctcaactggcaaaaatgttaaaattgttaggccgaatgtcat 10720503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1067 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1067
Description:

Target: scaffold1067; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 318
Target Start/End: Complemental strand, 2992 - 2935
Alignment:
Q  261 gtctcaaaaatcctaactcaactgacaaaaatgttgaaattgttaggccgaacgtcat 318  Q
    |||||| || |||||| |||||||||||||||  | |||||||| |||||||||||||    
T  2992 gtctcataagtcctaattcaactgacaaaaatactaaaattgtttggccgaacgtcat 2935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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