View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20634_low_24 (Length: 383)
Name: NF20634_low_24
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20634_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 45243841 - 45244197
Alignment:
| Q |
19 |
tatcttctcaaataaaaaactgaaggatttgggattggaatttacaccagtgagtgaatgtttatatgaaaccgttaagaacctacaagaccaaggtcac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45243841 |
tatcttctcaaataaaaaactgaaggatttgggattggaatttacaccagtgagtgaatgtttatatgaaaccgttaagagcctacaagaccaaggtcac |
45243940 |
T |
|
| Q |
119 |
ctttctattccaaacaaagaagattctctagcagtcaaatcctaaaccaaccatcctttgttaacaagtttaattcaggtccaaaaagaatcatctttta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
45243941 |
ctttctattccaaacaaagaagattctctagcagtcaaatcctaaaccaaccatcctttgttaacaagttcaattcagggccaaaaagaatcatctttta |
45244040 |
T |
|
| Q |
219 |
cctacctgcgaggctttaggctctaccaatttgatattataaatgaccgtaattggatggatagttgtaagaaagtatcatgctagaatttacta-ttgt |
317 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45244041 |
gctacctgcgaggctttaggctctagcaatttgatactataaatgaccgtaattggatggatagttgtaagaaagtatcatgctagaatttactatttgt |
45244140 |
T |
|
| Q |
318 |
cgttatgtttgaaaaataagcccattatattattgtcatccttattagtattttctt |
374 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45244141 |
ctttatgtttgaaaaataagcccattatattattgtcatccttattagtattttctt |
45244197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 866505 - 866608
Alignment:
| Q |
26 |
tcaaataaaaaactgaaggatttgggattggaatttacaccagtgagtgaatgtttatatgaaaccgttaagaacctacaagaccaaggtcacctttcta |
125 |
Q |
| |
|
|||||| |||| ||||| || |||||||||||||| ||||| |||| ||||||||||||| || |||| || |||||||| |||| |||||| ||| |
|
|
| T |
866505 |
tcaaatcaaaagctgaaagacttgggattggaattcacacctgtgaagcaatgtttatatgacactgttaggagtctacaagagaaaggacaccttccta |
866604 |
T |
|
| Q |
126 |
ttcc |
129 |
Q |
| |
|
|||| |
|
|
| T |
866605 |
ttcc |
866608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University