View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20634_low_27 (Length: 368)
Name: NF20634_low_27
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20634_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 13 - 351
Target Start/End: Original strand, 24695257 - 24695603
Alignment:
| Q |
13 |
gagacaaataaaatctgagctgaattagatggtatgaattaagtcacttgtgcactttaaaatcaccagaacaatctgaattttcaaaccgtaatatcgt |
112 |
Q |
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| T |
24695257 |
gagacaaataaaatctgagctgaattagatggtatgaattaagtcacctgtgcactttaaaatcaccagaacaatctgaattttcaaaccgtaatatcgt |
24695356 |
T |
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| Q |
113 |
caaggaaaacccgcggattcaaacaccattgtacaatgttgtaattattgatctttaatttaatacgcaaccagttccaagaataaactttcatctcctc |
212 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24695357 |
caaggaaaacccgcggattcaaacaccactgcacaatgttgtaattattgatatttaatttaatacgcaaccagttccaagaataaactttcatctcctc |
24695456 |
T |
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| Q |
213 |
gtgca-nnnnnnnnngtgcctttatttgttgtgaaata-------gtttcttgtctttcaaatgttccacacacatgtgaaccaaactacattgacacgc |
304 |
Q |
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||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24695457 |
gtgcattttttttttgtgcctttatttgttgggaaatagtttcttgtttcttgtctttcaaatgttccacacacatgtgaaccaaactacattgacacgc |
24695556 |
T |
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| Q |
305 |
tttgagaatgctcttcttctacctagtagaccttccttccttttgaa |
351 |
Q |
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| T |
24695557 |
tttgagaatgctcttcttctacctagtagaccttccttccttttgaa |
24695603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 13 - 351
Target Start/End: Original strand, 24707791 - 24708137
Alignment:
| Q |
13 |
gagacaaataaaatctgagctgaattagatggtatgaattaagtcacttgtgcactttaaaatcaccagaacaatctgaattttcaaaccgtaatatcgt |
112 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||||| || ||||||| |||||||||||||| |||| |||||||||| ||||||| || |
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| T |
24707791 |
gagacaaataaaatctgagttgaattagagggtatgaattaagtcaattatgcacttcaaaatcaccagaaccatctaaattttcaaaatgtaatattgt |
24707890 |
T |
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| Q |
113 |
caaggaaaacccgcggattcaaacaccattgtacaatgttgtaattattgatctttaatttaatacgcaaccagttccaagaataaactttcatctcctc |
212 |
Q |
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||||| || | |||| |||||||| | || ||||| ||||||| | || ||| ||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
24707891 |
caaggcaagcaaacggactcaaacacgactgcacaatattgtaatcgtgaatatttgatttaatccacaaccagttccaagaataaactttcatctcctc |
24707990 |
T |
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| Q |
213 |
gtgca-nnnnnnnnngtgcctttatttgttgtgaaatagtttctt-------gtctttcaaatgttccacacacatgtgaaccaaactacattgacacgc |
304 |
Q |
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||| ||| |||| ||| ||||||||||||||||| ||||| |||||| |||||||||| | ||||||||||||| |||||||| |
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| T |
24707991 |
aagcattttttctatgtgactttttttattgtgaaatagtttcttgtttctagtcttccaaatgctccacacacaggagaaccaaactacactgacacgc |
24708090 |
T |
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| Q |
305 |
tttgagaatgctcttcttctacctagtagaccttccttccttttgaa |
351 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24708091 |
tttgagaatgctcttccgctacctagtagaccttccttccttttgaa |
24708137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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