View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20634_low_28 (Length: 356)

Name: NF20634_low_28
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20634_low_28
NF20634_low_28
[»] chr5 (8 HSPs)
chr5 (82-300)||(1951633-1951848)
chr5 (307-353)||(1951598-1951644)
chr5 (319-354)||(38661209-38661244)
chr5 (319-353)||(11448720-11448754)
chr5 (319-353)||(29302270-29302304)
chr5 (319-353)||(30486097-30486131)
chr5 (319-353)||(30688080-30688114)
chr5 (319-353)||(33833219-33833253)
[»] chr1 (9 HSPs)
chr1 (202-254)||(40631217-40631269)
chr1 (319-353)||(12864280-12864314)
chr1 (319-353)||(14387563-14387597)
chr1 (319-353)||(16960445-16960479)
chr1 (319-353)||(20411360-20411394)
chr1 (319-353)||(27255815-27255849)
chr1 (319-353)||(32716394-32716428)
chr1 (321-353)||(12010512-12010544)
chr1 (317-353)||(27389473-27389509)
[»] chr4 (13 HSPs)
chr4 (319-353)||(6214002-6214036)
chr4 (319-353)||(578924-578958)
chr4 (319-353)||(5157017-5157051)
chr4 (319-353)||(7630076-7630110)
chr4 (319-353)||(14203035-14203069)
chr4 (319-353)||(17180969-17181003)
chr4 (319-353)||(17745167-17745201)
chr4 (319-353)||(30820654-30820688)
chr4 (319-353)||(42808076-42808110)
chr4 (319-353)||(48560017-48560051)
chr4 (320-353)||(47382181-47382214)
chr4 (321-353)||(50182196-50182228)
chr4 (321-353)||(51784135-51784167)
[»] chr2 (7 HSPs)
chr2 (319-353)||(22302154-22302188)
chr2 (319-353)||(7682180-7682214)
chr2 (319-353)||(9689552-9689586)
chr2 (319-353)||(15554198-15554232)
chr2 (319-353)||(38986955-38986989)
chr2 (319-353)||(39906446-39906480)
chr2 (319-353)||(44542845-44542879)
[»] scaffold0074 (1 HSPs)
scaffold0074 (319-353)||(26217-26251)
[»] scaffold0068 (1 HSPs)
scaffold0068 (319-353)||(57893-57927)
[»] scaffold0002 (1 HSPs)
scaffold0002 (319-353)||(452531-452565)
[»] chr8 (5 HSPs)
chr8 (319-353)||(5642518-5642552)
chr8 (319-353)||(5644459-5644493)
chr8 (319-353)||(14826289-14826323)
chr8 (319-353)||(25281115-25281149)
chr8 (321-353)||(9483814-9483846)
[»] chr7 (7 HSPs)
chr7 (319-353)||(18199568-18199602)
chr7 (319-353)||(20516920-20516954)
chr7 (319-353)||(24720261-24720295)
chr7 (319-353)||(27597020-27597054)
chr7 (319-353)||(27811942-27811976)
chr7 (319-353)||(33889082-33889116)
chr7 (319-353)||(45225260-45225294)
[»] chr6 (7 HSPs)
chr6 (319-353)||(1370064-1370098)
chr6 (319-353)||(4184425-4184459)
chr6 (319-353)||(9955961-9955995)
chr6 (319-353)||(11100546-11100580)
chr6 (319-353)||(15962903-15962937)
chr6 (319-353)||(27828477-27828511)
chr6 (319-353)||(31133042-31133076)
[»] chr3 (12 HSPs)
chr3 (319-353)||(2868330-2868364)
chr3 (319-353)||(6114775-6114809)
chr3 (319-353)||(7521352-7521386)
chr3 (319-353)||(7848521-7848555)
chr3 (319-353)||(8815326-8815360)
chr3 (319-353)||(11460144-11460178)
chr3 (319-353)||(12896631-12896665)
chr3 (319-353)||(17226341-17226375)
chr3 (319-353)||(21408649-21408683)
chr3 (319-353)||(21727639-21727673)
chr3 (319-353)||(27728185-27728219)
chr3 (319-353)||(47461688-47461722)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 82 - 300
Target Start/End: Complemental strand, 1951848 - 1951633
Alignment:
Q  82 ttgttggtgatccaagctgctcttgttaatattggcactctaggaacaaagcaagatttaataacaaagtaattccttggaagtctgcagcagcttacat 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |    
T  1951848 ttgttggtgatccaagctgctcttgttaatattggcactctaggaacaaagcaagatttaataacaaagtaattccttggaagtctgcagcagc-----t 1951754  T
Q  182 tacattatttgaaatgtttctctttcaagt---gtagcatagaccctcccaaagataatatcatcaaggaagttttgtggtatccccccactatcaatgg 278  Q
    ||| ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |    
T  1951753 tacgttatttgaaatgtttctctttcaagtgtagtagcatagaccctcccaaagataatatcatcaaggaagttttgtggtat-cccccattatcaattg 1951655  T
Q  279 gaataactaaatgtaactgtga 300  Q
    || |||||||||||||||||||    
T  1951654 gactaactaaatgtaactgtga 1951633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 1951644 - 1951598
Alignment:
Q  307 atgtaactgtgatgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  1951644 atgtaactgtgatgttttagcaaagctacaccttaaggtgtatttaa 1951598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 354
Target Start/End: Original strand, 38661209 - 38661244
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaaa 354  Q
    ||||||||||||||||||| ||||||||||||||||    
T  38661209 tgttttagcaaagctacaccttaaggtgtatttaaa 38661244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 11448720 - 11448754
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  11448720 tgttttagcaaagctacaccttaaggtgtatttaa 11448754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 29302304 - 29302270
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  29302304 tgttttagcaaagctacaccttaaggtgtatttaa 29302270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 30486097 - 30486131
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  30486097 tgttttagcaaagctacaccttaaggtgtatttaa 30486131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 30688114 - 30688080
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  30688114 tgttttagcaaagctacaccttaaggtgtatttaa 30688080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 33833253 - 33833219
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  33833253 tgttttagcaaagctacaccttaaggtgtatttaa 33833219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 40631217 - 40631269
Alignment:
Q  202 tctttcaagtgtagcatagaccctcccaaagataatatcatcaaggaagtttt 254  Q
    ||||||||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  40631217 tctttcaagtgtaacataaaccctcccaaatataatatcatcaaggaagtttt 40631269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 12864280 - 12864314
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  12864280 tgttttagcaaagctacaccttaaggtgtatttaa 12864314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 14387597 - 14387563
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  14387597 tgttttagcaaagctacaccttaaggtgtatttaa 14387563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 16960479 - 16960445
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  16960479 tgttttagcaaagctacaccttaaggtgtatttaa 16960445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 20411394 - 20411360
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  20411394 tgttttagcaaagctacaccttaaggtgtatttaa 20411360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 27255849 - 27255815
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  27255849 tgttttagcaaagctacaccttaaggtgtatttaa 27255815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 32716394 - 32716428
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  32716394 tgttttagcaaagctacaccttaaggtgtatttaa 32716428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 12010512 - 12010544
Alignment:
Q  321 ttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||| |||||||||||||||    
T  12010512 ttttagcaaagctacaccttaaggtgtatttaa 12010544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 27389473 - 27389509
Alignment:
Q  317 gatgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  27389473 gatgttttagcaaagctacaccttaaggtgtgtttaa 27389509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 6214002 - 6214036
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    |||||||||||||||||||||||||||||||||||    
T  6214002 tgttttagcaaagctacactttaaggtgtatttaa 6214036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 578958 - 578924
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  578958 tgttttagcaaagctacaccttaaggtgtatttaa 578924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 5157017 - 5157051
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  5157017 tgttttagcaaagctacaccttaaggtgtatttaa 5157051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 7630076 - 7630110
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  7630076 tgttttagcaaagctacaccttaaggtgtatttaa 7630110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 14203069 - 14203035
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  14203069 tgttttagcaaagctacaccttaaggtgtatttaa 14203035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 17180969 - 17181003
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  17180969 tgttttagcaaagctacaccttaaggtgtatttaa 17181003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 17745167 - 17745201
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  17745167 tgttttagcaaagctacaccttaaggtgtatttaa 17745201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 30820688 - 30820654
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  30820688 tgttttagcaaagctacaccttaaggtgtatttaa 30820654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 42808110 - 42808076
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  42808110 tgttttagcaaagctacaccttaaggtgtatttaa 42808076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 48560017 - 48560051
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  48560017 tgttttagcaaagctacaccttaaggtgtatttaa 48560051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 47382181 - 47382214
Alignment:
Q  320 gttttagcaaagctacactttaaggtgtatttaa 353  Q
    |||||||||||||||||| |||||||||||||||    
T  47382181 gttttagcaaagctacaccttaaggtgtatttaa 47382214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 50182196 - 50182228
Alignment:
Q  321 ttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||| |||||||||||||||    
T  50182196 ttttagcaaagctacaccttaaggtgtatttaa 50182228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 353
Target Start/End: Complemental strand, 51784167 - 51784135
Alignment:
Q  321 ttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||| |||||||||||||||    
T  51784167 ttttagcaaagctacaccttaaggtgtatttaa 51784135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 22302188 - 22302154
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    |||||||||||||||||||||||||||||||||||    
T  22302188 tgttttagcaaagctacactttaaggtgtatttaa 22302154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 7682214 - 7682180
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  7682214 tgttttagcaaagctacaccttaaggtgtatttaa 7682180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 9689586 - 9689552
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  9689586 tgttttagcaaagctacaccttaaggtgtatttaa 9689552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 15554232 - 15554198
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||| |||||||||||||||||||||    
T  15554232 tgttttagcaaagttacactttaaggtgtatttaa 15554198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 38986955 - 38986989
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  38986955 tgttttagcaaagctacaccttaaggtgtatttaa 38986989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 39906480 - 39906446
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  39906480 tgttttagcaaagctacaccttaaggtgtatttaa 39906446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 44542845 - 44542879
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  44542845 tgttttagcaaagctacaccttaaggtgtatttaa 44542879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 26251 - 26217
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  26251 tgttttagcaaagctacaccttaaggtgtatttaa 26217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 57893 - 57927
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  57893 tgttttagcaaagctacaccttaaggtgtatttaa 57927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 452565 - 452531
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  452565 tgttttagcaaagctacaccttaaggtgtatttaa 452531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 5642518 - 5642552
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    |||| ||||||||||||||||||||||||||||||    
T  5642518 tgttctagcaaagctacactttaaggtgtatttaa 5642552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 5644459 - 5644493
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    |||| ||||||||||||||||||||||||||||||    
T  5644459 tgttctagcaaagctacactttaaggtgtatttaa 5644493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 14826289 - 14826323
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  14826289 tgttttagcaaagctacaccttaaggtgtatttaa 14826323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 25281149 - 25281115
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  25281149 tgttttagcaaagctacaccttaaggtgtatttaa 25281115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 353
Target Start/End: Complemental strand, 9483846 - 9483814
Alignment:
Q  321 ttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||| |||||||||||||||    
T  9483846 ttttagcaaagctacaccttaaggtgtatttaa 9483814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 18199568 - 18199602
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  18199568 tgttttagcaaagctacaccttaaggtgtatttaa 18199602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 20516920 - 20516954
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  20516920 tgttttagcaaagctacaccttaaggtgtatttaa 20516954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 24720261 - 24720295
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  24720261 tgttttagcaaagctacaccttaaggtgtatttaa 24720295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 27597020 - 27597054
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  27597020 tgttttagcaaagctacaccttaaggtgtatttaa 27597054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 27811942 - 27811976
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  27811942 tgttttagcaaagctacaccttaaggtgtatttaa 27811976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 33889082 - 33889116
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  33889082 tgttttagcaaagctacaccttaaggtgtatttaa 33889116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 45225260 - 45225294
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  45225260 tgttttagcaaagctacaccttaaggtgtatttaa 45225294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 1370098 - 1370064
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  1370098 tgttttagcaaagctacaccttaaggtgtatttaa 1370064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 4184459 - 4184425
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  4184459 tgttttagcaaagctacaccttaaggtgtatttaa 4184425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 9955995 - 9955961
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  9955995 tgttttagcaaagctacaccttaaggtgtatttaa 9955961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 11100580 - 11100546
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  11100580 tgttttagcaaagctacaccttaaggtgtatttaa 11100546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 15962937 - 15962903
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  15962937 tgttttagcaaagctacaccttaaggtgtatttaa 15962903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 27828511 - 27828477
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  27828511 tgttttagcaaagctacaccttaaggtgtatttaa 27828477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 31133076 - 31133042
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  31133076 tgttttagcaaagctacaccttaaggtgtatttaa 31133042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 2868364 - 2868330
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  2868364 tgttttagcaaagctacaccttaaggtgtatttaa 2868330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 6114775 - 6114809
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  6114775 tgttttagcaaagctacaccttaaggtgtatttaa 6114809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 7521352 - 7521386
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  7521352 tgttttagcaaagctacaccttaaggtgtatttaa 7521386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 7848521 - 7848555
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  7848521 tgttttagcaaagctacaccttaaggtgtatttaa 7848555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 8815326 - 8815360
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  8815326 tgttttagcaaagctacaccttaaggtgtatttaa 8815360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 11460144 - 11460178
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  11460144 tgttttagcaaagctacaccttaaggtgtatttaa 11460178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 12896631 - 12896665
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  12896631 tgttttagcaaagctacaccttaaggtgtatttaa 12896665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 17226375 - 17226341
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  17226375 tgttttagcaaagctacaccttaaggtgtatttaa 17226341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 21408683 - 21408649
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  21408683 tgttttagcaaagctacaccttaaggtgtatttaa 21408649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 21727639 - 21727673
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  21727639 tgttttagcaaagctacaccttaaggtgtatttaa 21727673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 27728185 - 27728219
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  27728185 tgttttagcaaagctacaccttaaggtgtatttaa 27728219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 353
Target Start/End: Original strand, 47461688 - 47461722
Alignment:
Q  319 tgttttagcaaagctacactttaaggtgtatttaa 353  Q
    ||||||||||||||||||| |||||||||||||||    
T  47461688 tgttttagcaaagctacaccttaaggtgtatttaa 47461722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University