View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20634_low_29 (Length: 345)
Name: NF20634_low_29
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20634_low_29 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 345
Target Start/End: Original strand, 1182227 - 1182564
Alignment:
| Q |
8 |
acaatagcaacaactgcgagatcataaaacttgaaaccttaaacacaatagtcataaaaccctccaaacccacaccaccacaccttaaaaccttcaaact |
107 |
Q |
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| T |
1182227 |
acaatagcaacaactgcgagatcataaaacttgaaaccttaaacacaatagtcataaaaccctccaaacccacaccaccacaccttaaaaccttcaaact |
1182326 |
T |
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| Q |
108 |
ctctttactcgaccaactttcacccaatatccatggcaacaccactttcttctacccaaaccattcttctgattcttctttctcccgaaaatcaaaactt |
207 |
Q |
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| T |
1182327 |
ctctttactcgaccaactttcacccaatatccatggcaacaccactttcttctacccaaaccattcttctgattcttctttctcccgaaaatcaaaactt |
1182426 |
T |
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| Q |
208 |
cttcataactcactctcacaaacactatcccttttttaccctctagccggacgtgtccaagacgccaccaccattaactgcaccgacgatggcgttttct |
307 |
Q |
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| T |
1182427 |
cttcataactcactctcacaaacactatcccttttttaccctctagccggacgtgtccaagacgccaccaccattaactgcaccgacgatggcgttttct |
1182526 |
T |
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| Q |
308 |
tcgtcgaatcacaaaccaccagcaatctctccgatatc |
345 |
Q |
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|| ||||||||||||||||||||||||||||||||||| |
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| T |
1182527 |
tcatcgaatcacaaaccaccagcaatctctccgatatc |
1182564 |
T |
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