View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20634_low_3 (Length: 596)
Name: NF20634_low_3
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20634_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 214 - 571
Target Start/End: Original strand, 31943419 - 31943775
Alignment:
| Q |
214 |
tgagtataggaacaatatggatatacataatggtcaaattgaatgcatctatacaatgcatgttccatccaaaaccaggattgtgatttctgataaaccc |
313 |
Q |
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| T |
31943419 |
tgagtataggaaaaatatggatatacataatcgtcaaattgaatgcatctatacaatgcatgttccatccaaaaccaggattgtgatttctgataaaccc |
31943518 |
T |
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| Q |
314 |
ctaacctcaatcgcaaagaaacaaacatctgtattactgcctcaacaacagaataatcacaccgacacataattccataattaaattagattatattagt |
413 |
Q |
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| T |
31943519 |
ctaacctcaatcgcaaagaaacaaacatctgtgttactgcctcaacaacagaataatcacacgg-cacataattccataattaaattagattatattagt |
31943617 |
T |
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| Q |
414 |
atatagatatgtatgatttatttatttttaaaagtcggcaggggctaagacagtagagccaataaaggtggcttcgccgctgagttcaactttcgttgtc |
513 |
Q |
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| T |
31943618 |
atatagatatgtatgatttatttatttttaaaagtcggcaggggctaagacagtagagtcaataaaggtggcttcgccgctgagttcaattttcgttgtc |
31943717 |
T |
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| Q |
514 |
catggtggtagatcatgagttatttgttgcatgcttggtgcaagtgttgaccttttta |
571 |
Q |
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| T |
31943718 |
catggtggtagatcatgagttatttattgcatgtttggtgcgagtgttgaccttttta |
31943775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 31943220 - 31943340
Alignment:
| Q |
14 |
gaagttaggttggtgggaggagctaggttgggagagtaatctttgactaggagtgtgattgtaaaaatgaaggtgtgagccaccatcatacagatagcat |
113 |
Q |
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| T |
31943220 |
gaagttaggttggtgggaggagctaggttgggagagtaatcattgactag-agtgtgattgtaaaaatgaaggtgtgagccaccatcatacagatagcat |
31943318 |
T |
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| Q |
114 |
atattcaatctagtctaggact |
135 |
Q |
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| T |
31943319 |
atattcaatctagtctaggact |
31943340 |
T |
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