View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20634_low_36 (Length: 285)

Name: NF20634_low_36
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20634_low_36
NF20634_low_36
[»] chr7 (18 HSPs)
chr7 (18-238)||(47202167-47202383)
chr7 (14-53)||(8154817-8154856)
chr7 (59-152)||(5226880-5226973)
chr7 (77-162)||(46374543-46374628)
chr7 (13-53)||(47203162-47203202)
chr7 (14-53)||(18951304-18951343)
chr7 (242-284)||(1806485-1806527)
chr7 (242-284)||(21920053-21920094)
chr7 (242-284)||(27569633-27569674)
chr7 (19-53)||(31642585-31642619)
chr7 (242-284)||(40856896-40856937)
chr7 (242-284)||(48460602-48460643)
chr7 (244-285)||(428192-428233)
chr7 (98-159)||(23568266-23568327)
chr7 (244-285)||(37476809-37476850)
chr7 (244-284)||(15877080-15877120)
chr7 (244-284)||(23574372-23574412)
chr7 (244-284)||(28501699-28501739)
[»] scaffold0034 (1 HSPs)
scaffold0034 (59-135)||(24208-24284)
[»] chr1 (11 HSPs)
chr1 (59-154)||(4537662-4537757)
chr1 (14-53)||(18583810-18583849)
chr1 (17-53)||(49786967-49787003)
chr1 (59-132)||(17901339-17901412)
chr1 (16-53)||(23443411-23443448)
chr1 (14-51)||(33611676-33611713)
chr1 (244-283)||(28712258-28712297)
chr1 (14-53)||(32542260-32542299)
chr1 (14-53)||(32542891-32542930)
chr1 (242-285)||(48977236-48977279)
chr1 (242-284)||(7435517-7435558)
[»] chr8 (11 HSPs)
chr8 (75-159)||(33075289-33075373)
chr8 (12-64)||(41530511-41530562)
chr8 (14-53)||(31520146-31520185)
chr8 (79-162)||(39140573-39140656)
chr8 (14-51)||(21004995-21005032)
chr8 (14-51)||(31519332-31519369)
chr8 (242-285)||(2261033-2261076)
chr8 (244-285)||(16871923-16871964)
chr8 (244-285)||(24247440-24247481)
chr8 (242-271)||(26439897-26439926)
chr8 (244-284)||(43460382-43460422)
[»] chr4 (15 HSPs)
chr4 (14-53)||(34972731-34972770)
chr4 (14-53)||(50392676-50392715)
chr4 (59-135)||(33349894-33349970)
chr4 (14-54)||(34973552-34973592)
chr4 (235-285)||(30839603-30839654)
chr4 (16-53)||(23524470-23524507)
chr4 (242-284)||(40438996-40439037)
chr4 (14-51)||(6229078-6229115)
chr4 (242-283)||(31296881-31296921)
chr4 (242-283)||(39103901-39103941)
chr4 (244-285)||(46548381-46548422)
chr4 (20-53)||(49397668-49397701)
chr4 (242-283)||(53973819-53973859)
chr4 (64-148)||(20452550-20452634)
chr4 (11-51)||(38218664-38218704)
[»] chr3 (19 HSPs)
chr3 (14-53)||(2358890-2358929)
chr3 (59-162)||(21963970-21964073)
chr3 (59-162)||(21986406-21986509)
chr3 (14-53)||(43472717-43472756)
chr3 (242-285)||(43745707-43745750)
chr3 (15-53)||(2358056-2358094)
chr3 (15-53)||(52777895-52777933)
chr3 (14-51)||(3938863-3938900)
chr3 (244-285)||(54830827-54830868)
chr3 (14-54)||(8657801-8657841)
chr3 (59-135)||(32876321-32876397)
chr3 (242-285)||(1129488-1129531)
chr3 (14-53)||(48303845-48303884)
chr3 (242-284)||(46936663-46936704)
chr3 (244-285)||(542368-542409)
chr3 (244-284)||(19608300-19608340)
chr3 (59-135)||(32878832-32878908)
chr3 (244-284)||(41901955-41901995)
chr3 (244-284)||(52179319-52179359)
[»] chr2 (10 HSPs)
chr2 (14-53)||(36949206-36949245)
chr2 (59-180)||(8804874-8804995)
chr2 (16-122)||(30491072-30491174)
chr2 (59-152)||(26881358-26881450)
chr2 (13-53)||(36948563-36948603)
chr2 (242-285)||(11598118-11598161)
chr2 (242-285)||(35896772-35896815)
chr2 (242-284)||(15362830-15362871)
chr2 (242-284)||(17809390-17809431)
chr2 (244-285)||(36023594-36023635)
[»] chr5 (12 HSPs)
chr5 (13-53)||(36359851-36359891)
chr5 (14-53)||(13171244-13171283)
chr5 (14-53)||(12465371-12465410)
chr5 (10-53)||(18342130-18342173)
chr5 (22-53)||(26190572-26190603)
chr5 (242-284)||(5204980-5205021)
chr5 (242-284)||(23690862-23690903)
chr5 (242-284)||(28332124-28332166)
chr5 (242-284)||(40756904-40756945)
chr5 (14-51)||(26189761-26189798)
chr5 (59-151)||(33094593-33094686)
chr5 (12-53)||(34440556-34440597)
[»] chr6 (3 HSPs)
chr6 (59-108)||(6229984-6230033)
chr6 (14-53)||(32044898-32044937)
chr6 (242-284)||(24248808-24248849)
[»] scaffold0131 (1 HSPs)
scaffold0131 (242-284)||(10673-10714)


Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 47202383 - 47202167
Alignment:
Q  18 cgcgcgagaatcctatagggtgggaaaagtaatactactccttaattaaatagactttgtaaaaagcttaagcctgacccttttattaaacaagctgggc 117  Q
    ||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  47202383 cgcgcgagaatcctatagg-tgggaaaagtaatact---ccttaattaaatagactttataaaaagcttaagtctgacccttttattaaacaagctgggc 47202288  T
Q  118 cgaactagactttaaatatgctaggtcgtaggcccctatcggacgacatgacttgtacccaccgccacattaacataaagcatgcttaaagaccgataaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47202287 cgaactagactttaaatatgctaggtcgtaggcccctatcggatgacatgacttgtacccaccgctacattaacataaagcatgcttaaagaccgataaa 47202188  T
Q  218 gaattacatggtaagtgttag 238  Q
    |||||||| ||||||||||||    
T  47202187 gaattacacggtaagtgttag 47202167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 8154856 - 8154817
Alignment:
Q  14 agggcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  8154856 agggcgcgcgagaatcctataggatgggaaaagtaatact 8154817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 5226973 - 5226880
Alignment:
Q  59 ttaattaaatagactttgtaaaaagcttaagcctgacccttttattaaacaagctgggccgaactagactttaaatatgctaggtcgtaggccc 152  Q
    |||| ||||||| |||| | |||||||| || ||| || ||||||||||| || | |||||| |||| ||||| ||| ||||||||||||||||    
T  5226973 ttaagtaaataggctttatgaaaagcttgagtctgtcctttttattaaacgagttaggccgagctaggctttatataggctaggtcgtaggccc 5226880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 46374543 - 46374628
Alignment:
Q  77 taaaaagcttaagcctgacccttttattaaacaagctgggccgaactagactttaaatatgctaggtcgtaggcccctatcggacg 162  Q
    |||||||||| || |||||| | ||| ||||| ||||||||||| ||||||||||||||  ||||   |||||||||| |||||||    
T  46374543 taaaaagcttgagtctgaccttgttaataaactagctgggccgagctagactttaaatagactagacagtaggcccctgtcggacg 46374628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 47203162 - 47203202
Alignment:
Q  13 tagggcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    |||||||||| ||||||||||||| ||||||||||||||||    
T  47203162 tagggcgcgctagaatcctataggatgggaaaagtaatact 47203202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 18951343 - 18951304
Alignment:
Q  14 agggcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    ||||||||| | ||||||||||||||||||||||||||||    
T  18951343 agggcgcgcaaaaatcctatagggtgggaaaagtaatact 18951304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 1806485 - 1806527
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacacc 284  Q
    ||||||||||||||||||| | |||||||| ||||||||||||    
T  1806485 aattctatggtacactcaatatatttgagtgtaccggtacacc 1806527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 21920094 - 21920053
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacacc 284  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  21920094 aattctatggtacactca-aaaatttgagtgtaccggtacacc 21920053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 27569674 - 27569633
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacacc 284  Q
    |||||||||||||||| ||||||||||||| ||||||||||||    
T  27569674 aattctatggtacact-aaaaaatttgagtgtaccggtacacc 27569633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 31642619 - 31642585
Alignment:
Q  19 gcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    |||||||||||||||||| ||||||||||||||||    
T  31642619 gcgcgagaatcctataggatgggaaaagtaatact 31642585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 40856937 - 40856896
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacacc 284  Q
    |||||||||||||| || |||||||||||||||||||||||||    
T  40856937 aattctatggtaca-tctaaaaatttgagtataccggtacacc 40856896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 48460643 - 48460602
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacacc 284  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  48460643 aattctatggtacactca-aaaatttgagtgtaccggtacacc 48460602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 428233 - 428192
Alignment:
Q  244 ttctatggtacactcaaaaaatttgagtataccggtacaccc 285  Q
    ||||||||||||||| |||||||||||| ||| |||||||||    
T  428233 ttctatggtacactcgaaaaatttgagtgtactggtacaccc 428192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 23568327 - 23568266
Alignment:
Q  98 ttttattaaacaagctgggccgaactagactttaaatatgctaggtcgtaggcccctatcgg 159  Q
    ||||||||||| ||||||| |||| ||| ||||||||| |||||| | ||||||||| ||||    
T  23568327 ttttattaaacgagctgggtcgaaataggctttaaataggctaggccataggcccctgtcgg 23568266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 37476809 - 37476850
Alignment:
Q  244 ttctatggtacactcaaaaaatttgagtataccggtacaccc 285  Q
    ||||||||||||||||| ||| |||||| |||||||||||||    
T  37476809 ttctatggtacactcaataaaattgagtgtaccggtacaccc 37476850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 15877080 - 15877120
Alignment:
Q  244 ttctatggtacactcaaaaaatttgagtataccggtacacc 284  Q
    |||||||||||| || |||||||||||| ||||||||||||    
T  15877080 ttctatggtacattcgaaaaatttgagtgtaccggtacacc 15877120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 23574372 - 23574412
Alignment:
Q  244 ttctatggtacactcaaaaaatttgagtataccggtacacc 284  Q
    ||||||||||||||| |||||||||||| ||||| ||||||    
T  23574372 ttctatggtacactcgaaaaatttgagtgtaccgctacacc 23574412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 28501739 - 28501699
Alignment:
Q  244 ttctatggtacactcaaaaaatttgagtataccggtacacc 284  Q
    ||||||||||||||| |||||||||||| ||||| ||||||    
T  28501739 ttctatggtacactcgaaaaatttgagtgtaccgctacacc 28501699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 24284 - 24208
Alignment:
Q  59 ttaattaaatagactttgtaaaaagcttaagcctgacccttttattaaacaagctgggccgaactagactttaaata 135  Q
    |||| |||||| | ||| |||||||||| ||||||||| ||||||||||||||||||||| | ||||||||||||||    
T  24284 ttaactaaataaattttataaaaagcttgagcctgacctttttattaaacaagctgggccaagctagactttaaata 24208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 4537662 - 4537757
Alignment:
Q  59 ttaattaaatagactttgtaaaaagcttaagcctgacccttttattaaacaagctgggccgaactagactttaaatatgctaggtcgtaggcccct 154  Q
    |||| |||||||||||| ||||||||||  |||||||  |||||||||||| |||||||| |  ||| ||||||||| |||||| |||||||||||    
T  4537662 ttaagtaaatagactttataaaaagcttgtgcctgacttttttattaaacaggctgggccaagttaggctttaaataggctaggacgtaggcccct 4537757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 18583810 - 18583849
Alignment:
Q  14 agggcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18583810 agggcgcgcgagaatcctatagggtgggaaaagtaatact 18583849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 49786967 - 49787003
Alignment:
Q  17 gcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    |||||||||||||||||||||||||||||||||||||    
T  49786967 gcgcgcgagaatcctatagggtgggaaaagtaatact 49787003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 17901339 - 17901412
Alignment:
Q  59 ttaattaaatagactttgtaaaaagcttaagcctgacccttttattaaacaagctgggccgaactagactttaa 132  Q
    |||||||||||| |||| |||||||||| || ||  || | ||||||||| || ||||||||||||||||||||    
T  17901339 ttaattaaataggctttataaaaagcttcagtctagccttcttattaaacgagttgggccgaactagactttaa 17901412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 23443411 - 23443448
Alignment:
Q  16 ggcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  23443411 ggcgcgcgagaatcctacagggtgggaaaagtaatact 23443448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 33611676 - 33611713
Alignment:
Q  14 agggcgcgcgagaatcctatagggtgggaaaagtaata 51  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  33611676 agggcgcgcgagaatcctatagggtggaaaaagtaata 33611713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 244 - 283
Target Start/End: Complemental strand, 28712297 - 28712258
Alignment:
Q  244 ttctatggtacactcaaaaaatttgagtataccggtacac 283  Q
    ||||||||||||||||| ||| ||||||||||||||||||    
T  28712297 ttctatggtacactcaataaaattgagtataccggtacac 28712258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 32542299 - 32542260
Alignment:
Q  14 agggcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  32542299 agggcgcgtgagaatcctatagagtgggaaaagtaatact 32542260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 32542891 - 32542930
Alignment:
Q  14 agggcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    |||||| |||||||||||||||||||| ||||||||||||    
T  32542891 agggcgtgcgagaatcctatagggtggaaaaagtaatact 32542930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 242 - 285
Target Start/End: Complemental strand, 48977279 - 48977236
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacaccc 285  Q
    ||||||||||||||||||| | |||||||| |||||||||||||    
T  48977279 aattctatggtacactcaatatatttgagtgtaccggtacaccc 48977236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 7435517 - 7435558
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacacc 284  Q
    ||||||||||||||||| |||||||||||| ||||||||||||    
T  7435517 aattctatggtacactc-aaaaatttgagtgtaccggtacacc 7435558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 33075373 - 33075289
Alignment:
Q  75 tgtaaaaagcttaagcctgacccttttattaaacaagctgggccgaactagactttaaatatgctaggtcgtaggcccctatcgg 159  Q
    |||||||||||| ||||||||| ||||||||||  |||||| |||| ||||||||||| || |||| ||| ||||||||| ||||    
T  33075373 tgtaaaaagcttgagcctgacctttttattaaatgagctggaccgagctagactttaagtaggctaagtcataggcccctgtcgg 33075289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 41530562 - 41530511
Alignment:
Q  12 atagggcgcgcgagaatcctatagggtgggaaaagtaatactactccttaatt 64  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  41530562 atagggcgcgcgagaatcctatagggtgagaaaagtaatact-ctccttaatt 41530511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 31520146 - 31520185
Alignment:
Q  14 agggcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31520146 agggcgcgcgagaatcctatagggtgggaaaagtaatact 31520185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 39140656 - 39140573
Alignment:
Q  79 aaaagcttaagcctgacccttttattaaacaagctgggccgaactagactttaaatatgctaggtcgtaggcccctatcggacg 162  Q
    |||||||| || |||||| |||||||||||||  ||||||||| ||| ||||||||||||||||| ||| |||| | |||||||    
T  39140656 aaaagcttgagtctgacctttttattaaacaaattgggccgaattaggctttaaatatgctaggttgtaagcccatgtcggacg 39140573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 21004995 - 21005032
Alignment:
Q  14 agggcgcgcgagaatcctatagggtgggaaaagtaata 51  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21004995 agggcgcgcgagaatcctatagggtgggaaaagtaata 21005032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 31519369 - 31519332
Alignment:
Q  14 agggcgcgcgagaatcctatagggtgggaaaagtaata 51  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31519369 agggcgcgcgagaatcctatagggtgggaaaagtaata 31519332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 242 - 285
Target Start/End: Original strand, 2261033 - 2261076
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacaccc 285  Q
    ||||||||||||||||||| | |||||||| |||||||||||||    
T  2261033 aattctatggtacactcaatatatttgagtgtaccggtacaccc 2261076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 16871964 - 16871923
Alignment:
Q  244 ttctatggtacactcaaaaaatttgagtataccggtacaccc 285  Q
    ||||||||||||||||| ||| |||||| |||||||||||||    
T  16871964 ttctatggtacactcaataaaattgagtgtaccggtacaccc 16871923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 24247440 - 24247481
Alignment:
Q  244 ttctatggtacactcaaaaaatttgagtataccggtacaccc 285  Q
    ||||||||||||||||| ||| |||||| |||||||||||||    
T  24247440 ttctatggtacactcaataaaattgagtgtaccggtacaccc 24247481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Complemental strand, 26439926 - 26439897
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagt 271  Q
    ||||||||||||||||||||||||||||||    
T  26439926 aattctatggtacactcaaaaaatttgagt 26439897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 43460382 - 43460422
Alignment:
Q  244 ttctatggtacactcaaaaaatttgagtataccggtacacc 284  Q
    ||||||||||||||| |||||||||||| ||||| ||||||    
T  43460382 ttctatggtacactcgaaaaatttgagtgtaccgctacacc 43460422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 34972770 - 34972731
Alignment:
Q  14 agggcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34972770 agggcgcgcgagaatcctatagggtgggaaaagtaatact 34972731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 50392676 - 50392715
Alignment:
Q  14 agggcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  50392676 agggcgcgcgagaatcctatagggtgggaaaagtaatact 50392715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 33349894 - 33349970
Alignment:
Q  59 ttaattaaatagactttgtaaaaagcttaagcctgacccttttattaaacaagctgggccgaactagactttaaata 135  Q
    |||||||||||  |||| ||| |||||| ||||||||| |||||||||| ||| ||||| ||| |||||||||||||    
T  33349894 ttaattaaataagctttataagaagcttgagcctgacctttttattaaataagttgggctgaattagactttaaata 33349970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 34973552 - 34973592
Alignment:
Q  14 agggcgcgcgagaatcctatagggtgggaaaagtaatacta 54  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  34973552 agggcgcacgagaatcctatagggtgggaaaagtaatacta 34973592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 30839654 - 30839603
Alignment:
Q  235 ttagggcaatt-ctatggtacactcaaaaaatttgagtataccggtacaccc 285  Q
    ||||||||||| ||||||||||||||| |||||||||| |||||||||||||    
T  30839654 ttagggcaatttctatggtacactcaataaatttgagtgtaccggtacaccc 30839603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 23524470 - 23524507
Alignment:
Q  16 ggcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    |||| |||||||||||||||||||||||||||||||||    
T  23524470 ggcgggcgagaatcctatagggtgggaaaagtaatact 23524507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 40439037 - 40438996
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacacc 284  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  40439037 aattctatggtacactca-aaaatttgagtgtaccggtacacc 40438996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 6229078 - 6229115
Alignment:
Q  14 agggcgcgcgagaatcctatagggtgggaaaagtaata 51  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  6229078 agggcgcgcgagaatcctatagaatgggaaaagtaata 6229115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 31296921 - 31296881
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacac 283  Q
    |||||||||||||||| ||||||||||||| |||||||||||    
T  31296921 aattctatggtacact-aaaaaatttgagtgtaccggtacac 31296881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 39103941 - 39103901
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacac 283  Q
    |||||||||||||||||| ||||||||||| |||||||||||    
T  39103941 aattctatggtacactca-aaaatttgagtgtaccggtacac 39103901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 46548381 - 46548422
Alignment:
Q  244 ttctatggtacactcaaaaaatttgagtataccggtacaccc 285  Q
    ||||| ||||||||||||||| |||||| |||||||||||||    
T  46548381 ttctacggtacactcaaaaaaattgagtgtaccggtacaccc 46548422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 49397668 - 49397701
Alignment:
Q  20 cgcgagaatcctatagggtgggaaaagtaatact 53  Q
    ||||||||||||||||| ||||||||||||||||    
T  49397668 cgcgagaatcctataggatgggaaaagtaatact 49397701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 53973859 - 53973819
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacac 283  Q
    |||||||||||||||||| ||||||||||| |||||||||||    
T  53973859 aattctatggtacactca-aaaatttgagtgtaccggtacac 53973819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 20452634 - 20452550
Alignment:
Q  64 taaatagactttgtaaaaagcttaagcctgacccttttattaaacaagctgggccgaactagactttaaatatgctaggtcgtag 148  Q
    |||||||||||| |||||||||| |||||||   | ||| ||||| ||||| || ||  ||||||||||||| ||| ||||||||    
T  20452634 taaatagactttataaaaagcttgagcctgatattgttaataaacgagctgagctgagttagactttaaataggctcggtcgtag 20452550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 38218664 - 38218704
Alignment:
Q  11 catagggcgcgcgagaatcctatagggtgggaaaagtaata 51  Q
    |||||||||||||||||  || |||||||||||||||||||    
T  38218664 catagggcgcgcgagaaggctgtagggtgggaaaagtaata 38218704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 2358890 - 2358929
Alignment:
Q  14 agggcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2358890 agggcgcgcgagaatcctatagggtgggaaaagtaatact 2358929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 162
Target Start/End: Complemental strand, 21964073 - 21963970
Alignment:
Q  59 ttaattaaatagactttgtaaaaagcttaagcctgacccttttattaaacaagctgggccgaactagactttaaatatgctaggtcgtaggcccctatcg 158  Q
    ||||||||||||   || |||||||||| |||||| || | ||| ||||| |||||||||||  ||| ||||||||| |||||| ||||||||||| |||    
T  21964073 ttaattaaataggtcttataaaaagcttgagcctggccttgttaataaacgagctgggccgagttaggctttaaataggctaggccgtaggcccctgtcg 21963974  T
Q  159 gacg 162  Q
    ||||    
T  21963973 gacg 21963970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 162
Target Start/End: Complemental strand, 21986509 - 21986406
Alignment:
Q  59 ttaattaaatagactttgtaaaaagcttaagcctgacccttttattaaacaagctgggccgaactagactttaaatatgctaggtcgtaggcccctatcg 158  Q
    ||||||||||||   || |||||||||| |||||| || | ||| ||||| |||||||||||  ||| ||||||||| |||||| ||||||||||| |||    
T  21986509 ttaattaaataggtcttataaaaagcttgagcctggccttgttaataaacgagctgggccgagttaggctttaaataggctaggccgtaggcccctgtcg 21986410  T
Q  159 gacg 162  Q
    ||||    
T  21986409 gacg 21986406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 43472756 - 43472717
Alignment:
Q  14 agggcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43472756 agggcgcgcgagaatcctatagggtgggaaaagtaatact 43472717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 285
Target Start/End: Complemental strand, 43745750 - 43745707
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacaccc 285  Q
    ||||||||||||||||||| | ||||||||||||||||||||||    
T  43745750 aattctatggtacactcaatatatttgagtataccggtacaccc 43745707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 2358094 - 2358056
Alignment:
Q  15 gggcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  2358094 gggcgcgcgagaatcctatagggtgggaaaaataatact 2358056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 52777895 - 52777933
Alignment:
Q  15 gggcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  52777895 gggcgcgcgagaatcctatagagtgggaaaagtaatact 52777933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 3938863 - 3938900
Alignment:
Q  14 agggcgcgcgagaatcctatagggtgggaaaagtaata 51  Q
    |||||||||||||||| |||||||||||||||||||||    
T  3938863 agggcgcgcgagaatcttatagggtgggaaaagtaata 3938900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 54830827 - 54830868
Alignment:
Q  244 ttctatggtacactcaaaaaatttgagtataccggtacaccc 285  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  54830827 ttctatggtacactcaataaaattgagtataccggtacaccc 54830868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 8657801 - 8657841
Alignment:
Q  14 agggcgcgcgagaatcctatagggtgggaaaagtaatacta 54  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  8657801 agggcgcgcgagaatcctataggattggaaaagtaatacta 8657841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 32876397 - 32876321
Alignment:
Q  59 ttaattaaatagactttgtaaaaagcttaagcctgacccttttattaaacaagctgggccgaactagactttaaata 135  Q
    |||| |||||||||||| |||||| ||| ||||||||| ||||||||||  |||||| || |  |||||||||||||    
T  32876397 ttaactaaatagactttataaaaaacttgagcctgacctttttattaaatgagctggaccaagttagactttaaata 32876321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 242 - 285
Target Start/End: Complemental strand, 1129531 - 1129488
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacaccc 285  Q
    ||||||||||||||||||| | |||||||| |||||||||||||    
T  1129531 aattctatggtacactcaatacatttgagtgtaccggtacaccc 1129488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 48303884 - 48303845
Alignment:
Q  14 agggcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  48303884 agggcgcgcgagaattctatagggtgggaaaagtgatact 48303845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 46936663 - 46936704
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacacc 284  Q
    ||||||||||||||| |||||||||||||| ||||||||||||    
T  46936663 aattctatggtacac-caaaaaatttgagtgtaccggtacacc 46936704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 542368 - 542409
Alignment:
Q  244 ttctatggtacactcaaaaaatttgagtataccggtacaccc 285  Q
    ||||||||||||||||| ||| |||||| |||||||||||||    
T  542368 ttctatggtacactcaataaaattgagtgtaccggtacaccc 542409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 19608300 - 19608340
Alignment:
Q  244 ttctatggtacactcaaaaaatttgagtataccggtacacc 284  Q
    ||||||||||||||| |||||||||| | ||||||||||||    
T  19608300 ttctatggtacactcgaaaaatttgaatgtaccggtacacc 19608340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 32878908 - 32878832
Alignment:
Q  59 ttaattaaatagactttgtaaaaagcttaagcctgacccttttattaaacaagctgggccgaactagactttaaata 135  Q
    |||| ||||||| |||| |||||| ||| ||||||||| ||||||||||  |||||| || |  |||||||||||||    
T  32878908 ttaactaaataggctttataaaaaacttgagcctgacctttttattaaatgagctggaccaagttagactttaaata 32878832  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 41901955 - 41901995
Alignment:
Q  244 ttctatggtacactcaaaaaatttgagtataccggtacacc 284  Q
    ||||||||||||||| |||||||||||| ||||| ||||||    
T  41901955 ttctatggtacactcgaaaaatttgagtgtaccgctacacc 41901995  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 52179359 - 52179319
Alignment:
Q  244 ttctatggtacactcaaaaaatttgagtataccggtacacc 284  Q
    ||||||||||||||| |||||||||||| ||| ||||||||    
T  52179359 ttctatggtacactcgaaaaatttgagtgtactggtacacc 52179319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 36949206 - 36949245
Alignment:
Q  14 agggcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36949206 agggcgcgcgagaatcctatagggtgggaaaagtaatact 36949245  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 180
Target Start/End: Original strand, 8804874 - 8804995
Alignment:
Q  59 ttaattaaatagactttgtaaaaagcttaagcctgacccttttattaaacaagctgggccgaactagactttaaatatgctaggtcgtaggcccctatcg 158  Q
    ||||||||||||  ||| ||||||| || || ||| || | ||| ||||  ||||| ||||| ||||||||||||||  ||||||||||||||||| |||    
T  8804874 ttaattaaataggttttataaaaagtttgagtctgtccttgttaataaatgagctgagccgagctagactttaaatagactaggtcgtaggcccctttcg 8804973  T
Q  159 gacgacatgacttgtacccacc 180  Q
     ||||| |||| ||| ||||||    
T  8804974 aacgacctgacatgttcccacc 8804995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 30491072 - 30491174
Alignment:
Q  16 ggcgcgcgagaatcctatagggtgggaaaagtaatactactccttaattaaatagactttgtaaaaagcttaagcctgacccttttattaaacaagctgg 115  Q
    ||||||||||||  || ||||||||||||||||||| |    ||||| | |||||||||| ||||||||| |||| |||| | ||||||||||||| | |    
T  30491072 ggcgcgcgagaaggctgtagggtgggaaaagtaatagt----cttaagttaatagactttttaaaaagctcaagcttgactcatttattaaacaagttag 30491167  T
Q  116 gccgaac 122  Q
    |||||||    
T  30491168 gccgaac 30491174  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 26881358 - 26881450
Alignment:
Q  59 ttaattaaatagactttgtaaaaagcttaagcctgacccttttattaaacaagctgggccgaactagactttaaatatgctaggtcgtaggccc 152  Q
    |||||||||||   ||| |||||||||| ||||| ||  ||||||||||| ||||| ||| |||||| ||||||||| ||| ||||||||||||    
T  26881358 ttaattaaataagatttataaaaagcttgagcctaacttttttattaaacgagctgagccaaactag-ctttaaataggcttggtcgtaggccc 26881450  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 36948603 - 36948563
Alignment:
Q  13 tagggcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  36948603 tagggcgcgcgaaaatcatatagggtgggaaaagtaatact 36948563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 242 - 285
Target Start/End: Original strand, 11598118 - 11598161
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacaccc 285  Q
    |||||||||||||||||||||||||||||| ||  |||||||||    
T  11598118 aattctatggtacactcaaaaaatttgagtgtattggtacaccc 11598161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 242 - 285
Target Start/End: Complemental strand, 35896815 - 35896772
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacaccc 285  Q
    ||||||||||||||||||| | |||||||| |||||||||||||    
T  35896815 aattctatggtacactcaatatatttgagtgtaccggtacaccc 35896772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 15362871 - 15362830
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacacc 284  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  15362871 aattctatggtacactca-aaaatttgagtgtaccggtacacc 15362830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 17809431 - 17809390
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacacc 284  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  17809431 aattctatggtacactca-aaaatttgagtgtaccggtacacc 17809390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 36023594 - 36023635
Alignment:
Q  244 ttctatggtacactcaaaaaatttgagtataccggtacaccc 285  Q
    ||||||||||||||||| || ||||||| |||||||||||||    
T  36023594 ttctatggtacactcaataattttgagtgtaccggtacaccc 36023635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 36359851 - 36359891
Alignment:
Q  13 tagggcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  36359851 tagggcgcgcgagaatgctatagggtgggaaaagtaatact 36359891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 13171283 - 13171244
Alignment:
Q  14 agggcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  13171283 agggcgcgcgagaatcctatagagtgggaaaagtaatact 13171244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 12465371 - 12465410
Alignment:
Q  14 agggcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  12465371 agggcgcgcgagaattctataggatgggaaaagtaatact 12465410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 18342130 - 18342173
Alignment:
Q  10 gcatagggcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    ||||||||||||||||||  | ||||||||||||||||||||||    
T  18342130 gcatagggcgcgcgagaaggccatagggtgggaaaagtaatact 18342173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 53
Target Start/End: Original strand, 26190572 - 26190603
Alignment:
Q  22 cgagaatcctatagggtgggaaaagtaatact 53  Q
    ||||||||||||||||||||||||||||||||    
T  26190572 cgagaatcctatagggtgggaaaagtaatact 26190603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 5205021 - 5204980
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacacc 284  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  5205021 aattctatggtacactca-aaaatttgagtgtaccggtacacc 5204980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 23690903 - 23690862
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacacc 284  Q
    |||||||||||||||| ||||||||||||| ||||||||||||    
T  23690903 aattctatggtacact-aaaaaatttgagtgtaccggtacacc 23690862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 28332124 - 28332166
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacacc 284  Q
    |||||||||||||||||||||||||||||| ||  ||||||||    
T  28332124 aattctatggtacactcaaaaaatttgagtgtattggtacacc 28332166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 40756945 - 40756904
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacacc 284  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  40756945 aattctatggtacactca-aaaatttgagtgtaccggtacacc 40756904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 26189798 - 26189761
Alignment:
Q  14 agggcgcgcgagaatcctatagggtgggaaaagtaata 51  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  26189798 agggcgcgcgagaatcctataggatgggaaaaggaata 26189761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 151
Target Start/End: Complemental strand, 33094686 - 33094593
Alignment:
Q  59 ttaattaaatagactttgtaaaaa-gcttaagcctgacccttttattaaacaagctgggccgaactagactttaaatatgctaggtcgtaggcc 151  Q
    |||||||||||||||| ||||||| | || || || ||| ||||||||||| || ||||  || |||| ||||||||| |||| ||||||||||    
T  33094686 ttaattaaatagacttcgtaaaaaagttttagtctaacctttttattaaacgagttgggttgatctaggctttaaataggctatgtcgtaggcc 33094593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 34440597 - 34440556
Alignment:
Q  12 atagggcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    ||||| ||||||||||| |||||||||| |||||||||||||    
T  34440597 ataggacgcgcgagaattctatagggtgagaaaagtaatact 34440556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 6230033 - 6229984
Alignment:
Q  59 ttaattaaatagactttgtaaaaagcttaagcctgacccttttattaaac 108  Q
    |||||||||||| |||| |||||||||| ||| |||||||||||||||||    
T  6230033 ttaattaaataggctttataaaaagctttagcgtgacccttttattaaac 6229984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 32044898 - 32044937
Alignment:
Q  14 agggcgcgcgagaatcctatagggtgggaaaagtaatact 53  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  32044898 agggcgggcgagaatcctatagggtggggaaagtaatact 32044937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 24248808 - 24248849
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacacc 284  Q
    ||||||||||||||||| |||||||||||| ||||||||||||    
T  24248808 aattctatggtacactc-aaaaatttgagtgtaccggtacacc 24248849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 10673 - 10714
Alignment:
Q  242 aattctatggtacactcaaaaaatttgagtataccggtacacc 284  Q
    |||||||||||||||| ||||||||||||| ||||||||||||    
T  10673 aattctatggtacact-aaaaaatttgagtgtaccggtacacc 10714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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