View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20634_low_37 (Length: 284)
Name: NF20634_low_37
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20634_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 38221065 - 38220800
Alignment:
| Q |
1 |
agtaaacatgtcacacacacaagaaatgatggccaaaagatgcctgaaaattctgataatattatggtaaggaacagtggtatatgcgaggaaagtataa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38221065 |
agtaaacatgtcacacacacaagaaatgatggccaaaagatgcctgaaaattctgataatattatggtaaggaacagtggtatatgccaggaaagtataa |
38220966 |
T |
|
| Q |
101 |
ataaacaatactttgggcttggatctgaaacacgagggacggcaactgatattccggatccttttggtatagagataggtaatcctgcagagattccaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38220965 |
ataaacaatactttgggcttggatctgaaacacgagggacggcgactgatattccggatccttttggtatagagataggtaatcctgcagagattccaga |
38220866 |
T |
|
| Q |
201 |
agggtatgaggagatatggatgctaaacgttcatgccattgatacgcgcggcgtggaggataagtt |
266 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38220865 |
agggtatgaggagatatggatgctaaacgttcatgccattgatacgcgcggcgtggaggataagtt |
38220800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 38243913 - 38243648
Alignment:
| Q |
1 |
agtaaacatgtcacacacacaagaaatgatggccaaaagatgcctgaaaattctgataatattatggtaaggaacagtggtatatgcgaggaaagtataa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||| ||||| | ||| |||| ||| | | | || ||||||||||| ||||| ||| || || |
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| T |
38243913 |
agtaaacatgtcacacacacaagaaatgatggcaaaaggatgcttcaaagttctaatattgtgaaagtgaggaacagtggcatatgtcagggaaatactc |
38243814 |
T |
|
| Q |
101 |
ataaacaatactttgggcttggatctgaaacacgagggacggcaactgatattccggatccttttggtatagagataggtaatcctgcagagattccaga |
200 |
Q |
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| |||||||||||| ||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
38243813 |
ttggacaatactttggcattggatccgaaacacgaggaacagcaacagatattccggatccttttggtatagagataggtaatcctgcagaggtttcaga |
38243714 |
T |
|
| Q |
201 |
agggtatgaggagatatggatgctaaacgttcatgccattgatacgcgcggcgtggaggataagtt |
266 |
Q |
| |
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||||| ||||| | |||| |||| || ||||||||||||||||| || ||||| ||||||||||| |
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| T |
38243713 |
agggtccgaggataaatgggtgcttaatgttcatgccattgatacacgtggcgtagaggataagtt |
38243648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 109 - 266
Target Start/End: Complemental strand, 38214915 - 38214758
Alignment:
| Q |
109 |
tactttgggcttggatctgaaacacgagggacggcaactgatattccggatccttttggtatagagataggtaatcctgcagagattccagaagggtatg |
208 |
Q |
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|||||||| |||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
38214915 |
tactttggccttggatccgaaacacgaggaacagcaacagatattccggatccttttggtatagagataggtaatcctgaagagattccagaagggtttg |
38214816 |
T |
|
| Q |
209 |
aggagatatggatgctaaacgttcatgccattgatacgcgcggcgtggaggataagtt |
266 |
Q |
| |
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|||||| |||| || | || ||||||||||| ||||||||||||| ||||||||||| |
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| T |
38214815 |
aggagaaatggttggttaatgttcatgccatcgatacgcgcggcgcagaggataagtt |
38214758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 67 - 248
Target Start/End: Complemental strand, 38248995 - 38248814
Alignment:
| Q |
67 |
gtaaggaacagtggtatatgcgaggaaagtataaataaacaatactttgggcttggatctgaaacacgagggacggcaactgatattccggatccttttg |
166 |
Q |
| |
|
|||||||||||||| |||||| ||| || || | | |||||||||||| |||||||| ||||||||||| ||| |||| |||||||| |||||||||| |
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| T |
38248995 |
gtaaggaacagtggcatatgccagggaaataccattccacaatactttggccttggatcagaaacacgaggaacgacaacagatattccagatccttttg |
38248896 |
T |
|
| Q |
167 |
gtatagagataggtaatcctgcagagattccagaagggtatgaggagatatggatgctaaacgttcatgccattgatacgcg |
248 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||||||||||| |||||||| |||| |||| || ||||||||||| |||||||| |
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| T |
38248895 |
gtatagagacaggtagtcctgaagagattccagaagggtttgaggagaaatggttgcttaatgttcatgccatcgatacgcg |
38248814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 8 - 263
Target Start/End: Complemental strand, 38227439 - 38227184
Alignment:
| Q |
8 |
atgtcacacacacaagaaatgatggccaaaagatgcctgaaaattctgataatattatggtaaggaacagtggtatatgcgaggaaagtataaataaaca |
107 |
Q |
| |
|
|||||||||||||| | ||| | |||| | ||||| | |||| |||||| || || | |||||||||||||| |||||| ||| || | | | ||| |
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| T |
38227439 |
atgtcacacacacagaagatgttagccacatgatgcttcaaaactctgatcatgttcttgtaaggaacagtggcatatgccagggaaatgctatttcaca |
38227340 |
T |
|
| Q |
108 |
atactttgggcttggatctgaaacacgagggacggcaactgatattccggatccttttggtatagagataggtaatcctgcagagattccagaagggtat |
207 |
Q |
| |
|
||||||||| ||||| || ||||||||||| ||| |||| |||||||| |||||||| |||||||||||||||||||||| |||||||||| |||||| | |
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| T |
38227339 |
atactttggacttgggtcagaaacacgaggaacgacaacagatattccagatcctttcggtatagagataggtaatcctgaagagattccacaagggttt |
38227240 |
T |
|
| Q |
208 |
gaggagatatggatgctaaacgttcatgccattgatacgcgcggcgtggaggataa |
263 |
Q |
| |
|
||||| | |||| |||| || |||||||||||||||||||| |||| |||||||| |
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|
| T |
38227239 |
gaggataaatggttgcttaatgttcatgccattgatacgcgaggcgcagaggataa |
38227184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 105 - 248
Target Start/End: Complemental strand, 38238871 - 38238728
Alignment:
| Q |
105 |
acaatactttgggcttggatctgaaacacgagggacggcaactgatattccggatccttttggtatagagataggtaatcctgcagagattccagaaggg |
204 |
Q |
| |
|
|||||||||||| |||||||| |||||||| || ||||| || ||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||| |
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| T |
38238871 |
acaatactttggccttggatccgaaacacgtggaacggcgaccgatattccggatcctttcggtatagagataggcaatcctgaagagattccagaaggg |
38238772 |
T |
|
| Q |
205 |
tatgaggagatatggatgctaaacgttcatgccattgatacgcg |
248 |
Q |
| |
|
| | | || | |||| |||| || ||||||||||| |||||||| |
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|
| T |
38238771 |
tttcacgaaaaatggttgcttaatgttcatgccatcgatacgcg |
38238728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 105 - 266
Target Start/End: Complemental strand, 38254072 - 38253911
Alignment:
| Q |
105 |
acaatactttgggcttggatctgaaacacgagggacggcaactgatattccggatccttttggtatagagataggtaatcctgcagagattccagaaggg |
204 |
Q |
| |
|
|||||||||||| |||||||| |||||| |||| || || ||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
38254072 |
acaatactttggccttggatccgaaacaagaggaacactgacagatattccggacccttttggtatagaggtaggtaatcctgcagaggttccagaaggg |
38253973 |
T |
|
| Q |
205 |
tatgaggagatatggatgctaaacgttcatgccattgatacgcgcggcgtggaggataagtt |
266 |
Q |
| |
|
| ||| |||| ||||||| | || ||||||||||| ||||| || || | ||||||||||| |
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|
| T |
38253972 |
tttgatgagaaatggatggttaatgttcatgccatcgatacacgaggtgcagaggataagtt |
38253911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 118 - 266
Target Start/End: Complemental strand, 17434459 - 17434311
Alignment:
| Q |
118 |
cttggatctgaaacacgagggacggcaactgatattccggatccttttggtatagagataggtaatcctgcagagattccagaagggtatgaggagatat |
217 |
Q |
| |
|
|||||||| ||||||||||| ||| | ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| | |
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|
| T |
17434459 |
cttggatccgaaacacgaggaacgccgactgacattccagatccttttggtatagagataggtaatcctgcagatattccagaagggtttgaggagaagt |
17434360 |
T |
|
| Q |
218 |
ggatgctaaacgttcatgccattgatacgcgcggcgtggaggataagtt |
266 |
Q |
| |
|
|| || | || |||||||||| ||||| || ||||| ||||||||||| |
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|
| T |
17434359 |
ggttgtttaatattcatgccatcgatacacgtggcgtagaggataagtt |
17434311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 118 - 264
Target Start/End: Complemental strand, 17455559 - 17455413
Alignment:
| Q |
118 |
cttggatctgaaacacgagggacggcaactgatattccggatccttttggtatagagataggtaatcctgcagagattccagaagggtatgaggagatat |
217 |
Q |
| |
|
|||||||| ||||||||||| || | || ||||||||||||||||||||||| ||||| |||||||| |||| ||||||||||||| |||||||| || |
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|
| T |
17455559 |
cttggatcagaaacacgaggaacaccgaccgatattccggatccttttggtatggagatgggtaatccaacagaaattccagaagggtttgaggagaaat |
17455460 |
T |
|
| Q |
218 |
ggatgctaaacgttcatgccattgatacgcgcggcgtggaggataag |
264 |
Q |
| |
|
|| || | || |||||||||| ||||| || ||||| ||||||||| |
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|
| T |
17455459 |
ggttgtttaatattcatgccatcgatacacgtggcgtagaggataag |
17455413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 246
Target Start/End: Original strand, 21546676 - 21546773
Alignment:
| Q |
149 |
atattccggatccttttggtatagagataggtaatcctgcagagattccagaagggtatgaggagatatggatgctaaacgttcatgccattgatacg |
246 |
Q |
| |
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||||||| || |||| ||||||||| | ||||||||||| || |||||| ||||||||| ||||| |||| || | || |||||||| ||||||||| |
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| T |
21546676 |
atattccagacccttatggtatagaagttggtaatcctgctgaaattccaaaagggtatgtggagaaatggttgatcaatgttcatgcaattgatacg |
21546773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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