View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20634_low_38 (Length: 283)
Name: NF20634_low_38
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20634_low_38 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 283
Target Start/End: Original strand, 24695012 - 24695271
Alignment:
| Q |
13 |
gagacaaacggacaaagattttgaaataaaaccaagatagtgcacaatgaacaaatcctcaaaagcttgttgcatttaaattacacctagccnnnnnnnn |
112 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24695012 |
gagacaaacggataaagattttgaaatacaaccaagatagtgcacaatgaacaaatcctcaaaagcttgttgcatttaaattacacctagccaaaaaaga |
24695111 |
T |
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| Q |
113 |
nnnnnnntgccctccacctcaattttgaaaccacccaaatattgaccacaaatcttggctagataatatccacacaatcccaaagcaaataataccatag |
212 |
Q |
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| T |
24695112 |
caaaaaatgccctccacctcaattttgaaaccaccca-----------caaatcttagctagataatatccacacaatcccaaagcaaataataccatag |
24695200 |
T |
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| Q |
213 |
cacaataccacccaaattgttgcaaacctaacacactgctatgataagacacaaccgagacaaataaaatc |
283 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24695201 |
cacaataccatccaaattgttgcaaacctaacacactgctatgataagacacaaccgagacaaataaaatc |
24695271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 203 - 283
Target Start/End: Original strand, 24707724 - 24707805
Alignment:
| Q |
203 |
aataccatagcacaataccacccaaattgttgcaaacctaacacactgctatgat-aagacacaaccgagacaaataaaatc |
283 |
Q |
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| T |
24707724 |
aataccagagcacagtaccacccaaactgctgcaaacctaacacactgctacgataaagacacaaccgagacaaataaaatc |
24707805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 24707522 - 24707571
Alignment:
| Q |
55 |
cacaatgaacaaatcctcaaaagcttgttgcatttaaattacacctagcc |
104 |
Q |
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| T |
24707522 |
cacaatgaacaaatcctcaaaaacttgttgcatttgaattacacatagcc |
24707571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 13326066 - 13326127
Alignment:
| Q |
121 |
gccctccacctcaattttgaaaccacccaaatattgaccacaaatcttggctagataatatc |
182 |
Q |
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| T |
13326066 |
gccctccacctcaatttagaaaccaccaaaatatcgaccacaaatctgagctacataatatc |
13326127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 13338402 - 13338463
Alignment:
| Q |
121 |
gccctccacctcaattttgaaaccacccaaatattgaccacaaatcttggctagataatatc |
182 |
Q |
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| T |
13338402 |
gccctccacctcaatttagaaaccaccaaaatatcgaccacaaatctgagctacataatatc |
13338463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 32636373 - 32636327
Alignment:
| Q |
121 |
gccctccacctcaattttgaaaccacccaaatattgaccacaaatct |
167 |
Q |
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| T |
32636373 |
gccctccatctcaattttgaaaccaccaaaatatcgaccacaaatct |
32636327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 5667939 - 5668000
Alignment:
| Q |
121 |
gccctccacctcaattttgaaaccacccaaatattgaccacaaatcttggctagataatatc |
182 |
Q |
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| T |
5667939 |
gccctccacctcaatttagaaaccaccaaaatatcgaccacaaatctgagctacataatatc |
5668000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 51285975 - 51285929
Alignment:
| Q |
121 |
gccctccacctcaattttgaaaccacccaaatattgaccacaaatct |
167 |
Q |
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||||||||||||||||||||||||||| |||||| ||| |||||||| |
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| T |
51285975 |
gccctccacctcaattttgaaaccaccaaaatatagacaacaaatct |
51285929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 48491961 - 48492007
Alignment:
| Q |
121 |
gccctccacctcaattttgaaaccacccaaatattgaccacaaatct |
167 |
Q |
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| T |
48491961 |
gccctccatctcaattttgaaacaaccaaaatatcgaccacaaatct |
48492007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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