View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20634_low_42 (Length: 273)

Name: NF20634_low_42
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20634_low_42
NF20634_low_42
[»] chr4 (16 HSPs)
chr4 (12-258)||(25494261-25494499)
chr4 (56-135)||(1821072-1821150)
chr4 (56-131)||(47943965-47944039)
chr4 (58-135)||(17330961-17331037)
chr4 (58-135)||(49263613-49263689)
chr4 (56-131)||(45666848-45666922)
chr4 (56-135)||(54982157-54982235)
chr4 (61-135)||(6949563-6949636)
chr4 (56-135)||(9088746-9088824)
chr4 (56-135)||(19443047-19443125)
chr4 (56-134)||(34031469-34031547)
chr4 (84-135)||(37209545-37209596)
chr4 (84-135)||(49299321-49299372)
chr4 (56-135)||(9808160-9808236)
chr4 (60-130)||(46196526-46196595)
chr4 (84-134)||(46430403-46430453)
[»] chr5 (11 HSPs)
chr5 (56-135)||(1584242-1584320)
chr5 (56-135)||(39585353-39585431)
chr5 (60-135)||(6428631-6428705)
chr5 (56-135)||(17201878-17201956)
chr5 (56-136)||(19804302-19804381)
chr5 (56-112)||(25612737-25612792)
chr5 (60-134)||(1584059-1584132)
chr5 (56-134)||(32474714-32474791)
chr5 (56-135)||(28620589-28620665)
chr5 (56-135)||(8544129-8544207)
chr5 (56-130)||(19133037-19133110)
[»] chr7 (10 HSPs)
chr7 (56-135)||(16197393-16197471)
chr7 (56-135)||(2271339-2271417)
chr7 (84-136)||(28226885-28226937)
chr7 (56-131)||(12394794-12394868)
chr7 (58-135)||(37124723-37124799)
chr7 (56-135)||(1752052-1752130)
chr7 (56-135)||(4567925-4568003)
chr7 (84-135)||(10534424-10534475)
chr7 (20-58)||(2273346-2273384)
chr7 (56-128)||(39618233-39618304)
[»] chr3 (12 HSPs)
chr3 (56-135)||(16236991-16237069)
chr3 (56-135)||(2599600-2599678)
chr3 (58-135)||(27817983-27818059)
chr3 (56-136)||(45647135-45647214)
chr3 (56-135)||(37030369-37030448)
chr3 (57-135)||(34824239-34824316)
chr3 (56-135)||(34669220-34669299)
chr3 (56-135)||(296992-297070)
chr3 (96-135)||(27264379-27264418)
chr3 (56-130)||(5494162-5494235)
chr3 (61-134)||(2094315-2094389)
chr3 (56-136)||(9589302-9589381)
[»] chr1 (7 HSPs)
chr1 (56-135)||(6295192-6295270)
chr1 (56-135)||(41117530-41117608)
chr1 (56-135)||(36319441-36319519)
chr1 (56-136)||(11817493-11817572)
chr1 (56-135)||(1394898-1394976)
chr1 (71-135)||(13254147-13254210)
chr1 (95-135)||(19270257-19270297)
[»] chr2 (6 HSPs)
chr2 (56-135)||(29408330-29408408)
chr2 (56-136)||(1398022-1398101)
chr2 (58-135)||(16806035-16806111)
chr2 (58-135)||(16845316-16845392)
chr2 (56-135)||(45271840-45271916)
chr2 (56-125)||(3309418-3309486)
[»] chr6 (3 HSPs)
chr6 (56-135)||(8049902-8049980)
chr6 (56-138)||(14093208-14093288)
chr6 (103-135)||(9353714-9353746)
[»] chr8 (5 HSPs)
chr8 (56-135)||(32234231-32234309)
chr8 (56-135)||(38402079-38402155)
chr8 (84-135)||(1256236-1256287)
chr8 (60-135)||(5871387-5871461)
chr8 (91-135)||(27232250-27232294)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 258
Target Start/End: Original strand, 25494261 - 25494499
Alignment:
Q  12 atgagaagaagataacattaaatttattgaaaatataaagtgtgtgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgtta 111  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  25494261 atgagatgaagataacattaaatttattgaaaatataaagtgtgtgagggtataataggaagacaatgtgcaaaaa-tgcacatcgctaatttggtgtta 25494359  T
Q  112 attttccaaaaagacacttaaaaattagattgtactatttgcacaagttcaaattccaaccggttctgtttcaactaatcatgaattcaagttttgtttt 211  Q
    |||||| ||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25494360 attttctaaaaagac--ttaaaaattagattgtactatttgtacaagttcaaattccaaccggttctgtttcaactaatcatgaattcaagttttggttt 25494457  T
Q  212 ctttctattaaaaaatgttacattacattatgacatgtcaacttaat 258  Q
    ||||||||| |||||||     |||||||||||||||||||||||||    
T  25494458 ctttctattgaaaaatg-----ttacattatgacatgtcaacttaat 25494499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 1821150 - 1821072
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||||||||||| |||| |||||||||||| | |||||||||| |||||||||||||||  |||||||||||||||||    
T  1821150 tgagggtataataggaagaaaatgtgcaaaaa-tacacatcgctattttggtgttaattttttaaaaagacacttaaaaa 1821072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 131
Target Start/End: Complemental strand, 47944039 - 47943965
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacactta 131  Q
    |||||||||||||| |||| |||||||||||| | |||||||||| |||||||||||||||  |||||||||||||    
T  47944039 tgagggtataataggaagaaaatgtgcaaaaa-tacacatcgctattttggtgttaattttttaaaaagacactta 47943965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 17330961 - 17331037
Alignment:
Q  58 agggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||||||||| |||| |||||||||||| | ||||| |||| |||||||||||||||| |||||||||||| ||||    
T  17330961 agggtataataggaagaaaatgtgcaaaaa-tacacattgctattttggtgttaattttctaaaaagacacttcaaaa 17331037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 49263613 - 49263689
Alignment:
Q  58 agggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    ||||| |||||| |||| |||||||||||| | ||| |||||| |||||||||||||||| |||||||||||||||||    
T  49263613 agggtctaataggaagaaaatgtgcaaaaa-tacacttcgctattttggtgttaattttctaaaaagacacttaaaaa 49263689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 45666848 - 45666922
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacactta 131  Q
    |||||||||||||| |||| |||||||||||| | |||||||||| |||||||| ||||||  |||||||||||||    
T  45666848 tgagggtataataggaagaaaatgtgcaaaaa-tacacatcgctattttggtgtgaattttttaaaaagacactta 45666922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 54982235 - 54982157
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||| |||||||||||| || ||||||||| | |||||| ||| |||| ||||||||||| |||||||||||||||||    
T  54982235 tgagggcataatagaaagaaaacgtgcaaaaa-tacacatcactattttgatgttaattttctaaaaagacacttaaaaa 54982157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 6949563 - 6949636
Alignment:
Q  61 gtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    ||||||||| |||| ||||| |||||| | ||||||| ||||||||||||||||||| ||||| |||||||||||    
T  6949563 gtataataggaagaaaatgtacaaaaa-tacacatcgttaatttggtgttaattttctaaaaatacacttaaaaa 6949636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 9088824 - 9088746
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||||||||||| |||| ||||||| || ||| |||||||||| ||| |||||||| ||| ||||||| |||||||||    
T  9088824 tgagggtataataggaagaaaatgtgc-aagaatacacatcgctattttagtgttaatgttctaaaaagatacttaaaaa 9088746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 19443125 - 19443047
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||||||||||| |||| |||||||||||| |  |||||| ||  ||||| ||||||||| |||||||||||||||||    
T  19443125 tgagggtataataggaagaaaatgtgcaaaaa-tatacatcgttatcttggtattaattttctaaaaagacacttaaaaa 19443047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 34031547 - 34031469
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttc-caaaaagacacttaaaa 134  Q
    |||||||||||||| |||| |||||||| ||||| |||||| ||| |||||| |||||||||  ||||||||||||||||    
T  34031547 tgagggtataataggaagaaaatgtgca-aaaatacacatcactattttggtcttaattttctaaaaaagacacttaaaa 34031469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 37209596 - 37209545
Alignment:
Q  84 aaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||| |||||||||| ||||||| |||||||| |||||||||||||||||    
T  37209596 aaaaatacacatcgctattttggtggtaattttctaaaaagacacttaaaaa 37209545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 49299372 - 49299321
Alignment:
Q  84 aaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||| |||||||||| ||| |||||||||||| |||||||||||||||||    
T  49299372 aaaaatacacatcgctatttttgtgttaattttctaaaaagacacttaaaaa 49299321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 9808160 - 9808236
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    ||||| |||||||| |||| ||||||  |||||| |||||||||| ||||||||||||||| | |||||||| |||||||    
T  9808160 tgaggatataataggaagaaaatgtg--aaaaatacacatcgctattttggtgttaatttt-ctaaaagacatttaaaaa 9808236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 46196526 - 46196595
Alignment:
Q  60 ggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacactt 130  Q
    |||||||||| |||| ||| |||||||| | ||| |||||| |||||||||||||||  ||||||||||||    
T  46196526 ggtataataggaagaaaatatgcaaaaa-tacacctcgctattttggtgttaattttataaaaagacactt 46196595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 46430453 - 46430403
Alignment:
Q  84 aaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaa 134  Q
    |||||| ||||||| || |||||||||||||||  ||||||||||||||||    
T  46430453 aaaaatacacatcgttattttggtgttaattttttaaaaagacacttaaaa 46430403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 1584242 - 1584320
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    ||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||  |||||||||||||||||    
T  1584242 tgagggtataatagaaagaaaatgtgcaaaaa-tacacatcgctaatttggtgttaattttttaaaaagacacttaaaaa 1584320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 39585431 - 39585353
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||||||||||| |||| |||||||||||| | ||| |||||| |||||||||||||||| |||||||||||||||||    
T  39585431 tgagggtataataggaagaaaatgtgcaaaaa-tacacgtcgctattttggtgttaattttctaaaaagacacttaaaaa 39585353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 6428631 - 6428705
Alignment:
Q  60 ggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    ||||||||||||||| |||||||||||| | |||||| ||| ||||||||||||||||  ||||||||||||||||    
T  6428631 ggtataatagaaagaaaatgtgcaaaaa-tacacatcactattttggtgttaattttcttaaaagacacttaaaaa 6428705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 17201956 - 17201878
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||||||||||| |||| |||||||||||| | |||||||||| |||  ||||||||||| |||||||||||||||||    
T  17201956 tgagggtataataggaagaaaatgtgcaaaaa-tacacatcgctatttttatgttaattttctaaaaagacacttaaaaa 17201878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 19804302 - 19804381
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaat 136  Q
    |||||||| ||||| |||| ||||| |||||| | ||||| |||||||| |||||||||||| ||||||||||||||||||    
T  19804302 tgagggtagaataggaagaaaatgtacaaaaa-tacacattgctaatttagtgttaattttctaaaaagacacttaaaaat 19804381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 25612792 - 25612737
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaa 112  Q
    |||||||||||||| |||| |||||||||||| | ||||||||||||||||||||||    
T  25612792 tgagggtataataggaagaaaatgtgcaaaaa-tacacatcgctaatttggtgttaa 25612737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 1584059 - 1584132
Alignment:
Q  60 ggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaa 134  Q
    |||||||||| |||| |||||||||||| | ||||||||||||||| |||| |||||  ||||||| ||||||||    
T  1584059 ggtataataggaagaaaatgtgcaaaaa-tacacatcgctaatttgatgtttattttttaaaaagatacttaaaa 1584132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 32474714 - 32474791
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaa 134  Q
    ||||||||||||||||||| ||||||| |||||| || ||||||| |||| || ||||||||  |||||| ||||||||    
T  32474714 tgagggtataatagaaagaaaatgtgc-aaaaatacaaatcgctattttgatggtaattttcttaaaagatacttaaaa 32474791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 28620589 - 28620665
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||||||||||| |||| || ||||||||| | ||||||| || ||  |||||||||||| |||||||||||||||||    
T  28620589 tgagggtataataggaagaaaaggtgcaaaaa-tacacatcgttattt--gtgttaattttctaaaaagacacttaaaaa 28620665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 8544207 - 8544129
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||||||||||  |||| |||||||||||| | ||||| | ||||||||||||||||||   ||||| ||||||||||    
T  8544207 tgagggtataatatgaagaaaatgtgcaaaaa-tacacattgttaatttggtgttaattttttgaaaaggcacttaaaaa 8544129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 19133110 - 19133037
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacactt 130  Q
    ||||||||||||||||||| ||||||  ||| || ||| |||||||||| ||| |||| |||||||| |||||||    
T  19133110 tgagggtataatagaaagaaaatgtg-taaatatacacttcgctaatttcgtgctaatattccaaaatgacactt 19133037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 16197393 - 16197471
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    ||||||||||||||||||| |||||||||||| | |||||| ||| |||||||||||||||| |||||||||||||||||    
T  16197393 tgagggtataatagaaagaaaatgtgcaaaaa-tacacatcactattttggtgttaattttctaaaaagacacttaaaaa 16197471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 2271417 - 2271339
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    ||||| |||||||| |||| |||||||||||| | |||||||||| |||||||||||||| | |||||||||||||||||    
T  2271417 tgaggatataataggaagaaaatgtgcaaaaa-tacacatcgctattttggtgttaatttcctaaaaagacacttaaaaa 2271339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 28226885 - 28226937
Alignment:
Q  84 aaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaat 136  Q
    |||||| ||||||||||||||||||||||| |||||||| |||||||||||||    
T  28226885 aaaaatacacatcgctaatttggtgttaatattccaaaacgacacttaaaaat 28226937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 12394794 - 12394868
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacactta 131  Q
    |||| ||||||||| |||| ||||||||||| |||||||||  || ||||||||| |||||| |||||||||||||    
T  12394794 tgagagtataataggaagaaaatgtgcaaaa-atgcacatcattattttggtgttcattttctaaaaagacactta 12394868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 37124723 - 37124799
Alignment:
Q  58 agggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||||||||| |||| ||||||||||||   ||||| |||| |||| || |||||||| |||||||||||||||||    
T  37124723 agggtataataggaagaaaatgtgcaaaaaca-cacattgctattttgatgctaattttctaaaaagacacttaaaaa 37124799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 1752130 - 1752052
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    ||||||||||||||||||| |||||| ||||||| ||| ||  ||| ||||||||| | ||||||||  |||||||||||    
T  1752130 tgagggtataatagaaagaaaatgtg-aaaaaatacacttccttaaattggtgttattattccaaaacaacacttaaaaa 1752052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 4567925 - 4568003
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    ||||||||||||||||||| || ||| ||||| | |||  ||||| |||| ||||||||||| ||||||||| |||||||    
T  4567925 tgagggtataatagaaagataacgtgtaaaaa-tacactgcgctattttgatgttaattttctaaaaagacatttaaaaa 4568003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 10534475 - 10534424
Alignment:
Q  84 aaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||| ||||||| || |||||||||||||||| ||||||||| |||||||    
T  10534475 aaaaatacacatcgttattttggtgttaattttctaaaaagacatttaaaaa 10534424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 2273384 - 2273346
Alignment:
Q  20 aagataacattaaatttattgaaaatataaagtgtgtga 58  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  2273384 aagataacattaaatttattgaaaagagaaagtgtgtga 2273346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 39618233 - 39618304
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacac 128  Q
    |||||||||||||| |||| ||||||| |||||| ||||||  || |||  ||||||||||| ||||||||||    
T  39618233 tgagggtataataggaagaaaatgtgc-aaaaatacacatctatatttttatgttaattttctaaaaagacac 39618304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 16237069 - 16236991
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||||||||||| |||| |||||| ||||||| |||||||||| ||| |||||||||||| |||||||||||||||||    
T  16237069 tgagggtataataggaagaaaatgtg-aaaaaatacacatcgctatttttgtgttaattttctaaaaagacacttaaaaa 16236991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 2599600 - 2599678
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||||||||||| || | |||||||||||| | |||||||||| ||| |||||||||||| |||||||||||||||||    
T  2599600 tgagggtataataggaataaaatgtgcaaaaa-tacacatcgctattttagtgttaattttctaaaaagacacttaaaaa 2599678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 27817983 - 27818059
Alignment:
Q  58 agggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||||||||| || | ||||||||||| |||||||||| || ||| |||||||||||| ||||| |||||||||||    
T  27817983 agggtataataggaataaaatgtgcaaaa-atgcacatcgttatttttgtgttaattttctaaaaaaacacttaaaaa 27818059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 45647135 - 45647214
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaat 136  Q
    |||||||||||||| |||| ||||||||| || | |||||||||| |||  ||||||||||| ||||| ||||||||||||    
T  45647135 tgagggtataataggaagaaaatgtgcaagaa-tacacatcgctatttttatgttaattttctaaaaaaacacttaaaaat 45647214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 37030448 - 37030369
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||||||| ||| |||| |||||||||||||| ||| |||  | ||| |||||||||||| ||||| |||||||||||    
T  37030448 tgagggtatactaggaagaaaatgtgcaaaaaatacacttcgtgatttttgtgttaattttctaaaaaaacacttaaaaa 37030369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 34824239 - 34824316
Alignment:
Q  57 gagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||||| ||||||||| |||||||||||| | ||| || |||||||||||| ||| ||| |||| ||||||||||||    
T  34824239 gagggtatgatagaaagaaaatgtgcaaaaa-tacacttcactaatttggtgtgaatattctaaaacgacacttaaaaa 34824316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 34669220 - 34669299
Alignment:
Q  56 tgagggtataatagaaagacaa-tgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||| |||||||||||| | || |||||||||| | |||||||||| |||  ||||||||||||||||| |||||||||||    
T  34669220 tgagagtataatagaaaaaaaaatgtgcaaaaa-tacacatcgctattttaatgttaattttccaaaaaaacacttaaaaa 34669299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 296992 - 297070
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||||||| ||| |||| ||||| |||||| | ||| |||||| |||||||||||| ||| |||| ||||||||||||    
T  296992 tgagggtatagtaggaagaaaatgtacaaaaa-tacacttcgctattttggtgttaatattctaaaacgacacttaaaaa 297070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 135
Target Start/End: Original strand, 27264379 - 27264418
Alignment:
Q  96 cgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  27264379 cgctaatttggtgttaattttttaaaaagacacttaaaaa 27264418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 5494162 - 5494235
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacactt 130  Q
    ||||| |||||||| |||| |||||||||||| | |||||| ||| ||| || ||||||||| ||||||||||||    
T  5494162 tgaggatataataggaagaaaatgtgcaaaaa-tacacatcactatttttgtattaattttctaaaaagacactt 5494235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 2094315 - 2094389
Alignment:
Q  61 gtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaa--ttttccaaaaagacacttaaaa 134  Q
    ||||||||| |||| |||||||||||| | |||||| ||| |||||||||||  ||||  ||||||||||||||||    
T  2094315 gtataataggaagaaaatgtgcaaaaa-tacacatcactattttggtgttaatttttttaaaaaagacacttaaaa 2094389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 9589302 - 9589381
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaat 136  Q
    |||||||| ||||| |||| || ||||||||| | ||| | |||| |||||||||||| ||| |||| |||||||||||||    
T  9589302 tgagggtacaataggaagaaaaagtgcaaaaa-tacactttgctattttggtgttaatattctaaaatgacacttaaaaat 9589381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 6295270 - 6295192
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    ||||||||||||||||||| |||||||||||| | |||||||||| ||| |||||||||||| ||||||||| |||||||    
T  6295270 tgagggtataatagaaagaaaatgtgcaaaaa-tacacatcgctattttagtgttaattttctaaaaagacatttaaaaa 6295192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 41117530 - 41117608
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    ||||||||||||||||| | ||  |||||||| | |||||||||| |||||||||||||||| |||||||||||||||||    
T  41117530 tgagggtataatagaaaaaaaaaatgcaaaaa-tacacatcgctagtttggtgttaattttctaaaaagacacttaaaaa 41117608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 36319519 - 36319441
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||| ||||||||| |||| |||||||||||| | |||||||||| ||| |||||||||||| ||||||| |||||||||    
T  36319519 tgagagtataataggaagaaaatgtgcaaaaa-tacacatcgctatttttgtgttaattttctaaaaagatacttaaaaa 36319441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 11817572 - 11817493
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaat 136  Q
    |||||||||||||| || | ||| |||||||| | | ||| ||||||||||||||||||||  ||||||| ||||||||||    
T  11817572 tgagggtataataggaaaaaaatctgcaaaaa-tacgcattgctaatttggtgttaattttttaaaaagaaacttaaaaat 11817493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 1394898 - 1394976
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    ||||||||| ||||||||| |||||| ||||||| ||| || |||||||| ||| ||| ||| |||| ||||||||||||    
T  1394898 tgagggtatgatagaaagaaaatgtg-aaaaaatacacttcactaatttgatgtgaatattctaaaacgacacttaaaaa 1394976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 13254210 - 13254147
Alignment:
Q  71 aagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||| |||||||||||| | |||||||||| |||| ||||||||||| ||||| || ||||||||    
T  13254210 aagaaaatgtgcaaaaa-tacacatcgctattttgatgttaattttctaaaaaaacgcttaaaaa 13254147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 19270257 - 19270297
Alignment:
Q  95 tcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    ||||||||||||||||||| || ||||| ||||||||||||    
T  19270257 tcgctaatttggtgttaatatttcaaaacgacacttaaaaa 19270297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 29408408 - 29408330
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    ||||||||||||||||||| |||||||||||| | ||||||| || |||||||||||||||| ||||| ||| |||||||    
T  29408408 tgagggtataatagaaagaaaatgtgcaaaaa-tacacatcgttattttggtgttaattttctaaaaaaacatttaaaaa 29408330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 1398022 - 1398101
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaat 136  Q
    |||||||||||| | |||| |||||||||||| | |||||||||| |||||||||||||||| ||||| ||||||| ||||    
T  1398022 tgagggtataattggaagaaaatgtgcaaaaa-tacacatcgctattttggtgttaattttctaaaaaaacacttacaaat 1398101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 16806111 - 16806035
Alignment:
Q  58 agggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||||||||| |||| || ||||||||| | |||||| ||| |||||| ||||||||| |||||||||||||||||    
T  16806111 agggtataataggaagaaaacgtgcaaaaa-tacacatcactattttggttttaattttctaaaaagacacttaaaaa 16806035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 16845392 - 16845316
Alignment:
Q  58 agggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||||||||| |||| || ||||||||| | |||||| ||| |||||| ||||||||| |||||||||||||||||    
T  16845392 agggtataataggaagaaaacgtgcaaaaa-tacacatcactattttggttttaattttctaaaaagacacttaaaaa 16845316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 45271916 - 45271840
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||||||||||| |||| ||||| |||||||| |||||| ||||||| ||||| |||||| ||||  |||||||||||    
T  45271916 tgagggtataataggaagaaaatgtacaaaaaatacacatcactaatttagtgtt-attttctaaaa--acacttaaaaa 45271840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 3309486 - 3309418
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaaga 125  Q
    |||||||||||||| |||| |||||||| ||||| ||||||| |  |||| ||||||||||| |||||||    
T  3309486 tgagggtataataggaagaaaatgtgca-aaaatacacatcgttgttttgatgttaattttctaaaaaga 3309418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 8049902 - 8049980
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||||||||||| |||| ||||||||||||   |||||||||| |||||||||||||||  |||||||||| ||||||    
T  8049902 tgagggtataataggaagaaaatgtgcaaaaaca-cacatcgctattttggtgttaattttttaaaaagacacataaaaa 8049980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 14093288 - 14093208
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaatta 138  Q
    |||||||||||||| |||| |||||||| ||||| ||||| |||||||||||||||| ||| | |||||| ||||||||||||    
T  14093288 tgagggtataataggaagaaaatgtgca-aaaatacacattgctaatttggtgttaacttt-ctaaaagatacttaaaaatta 14093208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 9353714 - 9353746
Alignment:
Q  103 ttggtgttaattttccaaaaagacacttaaaaa 135  Q
    ||||||||||||||| |||||||||||||||||    
T  9353714 ttggtgttaattttctaaaaagacacttaaaaa 9353746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 32234231 - 32234309
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||||||||||| |||| ||||| |||||| | |||||||||| |||| ||| ||||||| ||||| |||||||||||    
T  32234231 tgagggtataataggaagaaaatgtacaaaaa-tacacatcgctattttgatgtaaattttctaaaaaaacacttaaaaa 32234309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 38402079 - 38402155
Alignment:
Q  56 tgagggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    ||||||||||||||||||| ||||||| |||||| ||||| |||| |||| |||||| |||| |||||||||||||||||    
T  38402079 tgagggtataatagaaaga-aatgtgc-aaaaatacacattgctattttgatgttaa-tttctaaaaagacacttaaaaa 38402155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 1256287 - 1256236
Alignment:
Q  84 aaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||| ||||  ||||||| ||||||||||||| |||||||||||||||||    
T  1256287 aaaaatacacaatgctaattcggtgttaattttctaaaaagacacttaaaaa 1256236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 5871387 - 5871461
Alignment:
Q  60 ggtataatagaaagacaatgtgcaaaaaatgcacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    |||||||||| |||| |||||| ||||| |  |||||||||||||| | ||||||||  |||||||||||||||||    
T  5871387 ggtataataggaagaaaatgtgtaaaaa-tatacatcgctaatttgatattaattttttaaaaagacacttaaaaa 5871461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 27232250 - 27232294
Alignment:
Q  91 cacatcgctaatttggtgttaattttccaaaaagacacttaaaaa 135  Q
    ||||||||||||||||  ||||||||| ||||| |||||||||||    
T  27232250 cacatcgctaatttgggtttaattttctaaaaaaacacttaaaaa 27232294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University