View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20634_low_44 (Length: 267)
Name: NF20634_low_44
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20634_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 45243616 - 45243393
Alignment:
| Q |
22 |
acgtagaccaaataaacaaatcaaatttggtataccaa-ctacgacacctttaatttcaattcgtctccaaaataacgaaataagagtgacttacttggt |
120 |
Q |
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| T |
45243616 |
acgtagaccacataaacaaatcaaatttggtataaaaaactacgacaccttt-----caattcgtctccaaaataacgaaataagagtgacttacttggt |
45243522 |
T |
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| Q |
121 |
aggaattgggtactcagggaaatacttagcaagaatttcaacaagttccccacgatgaagtgaactttcagcacataagtatctaccagaagcagaaggt |
220 |
Q |
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| T |
45243521 |
aggaattgggtactcagggaaatacttagcaagaatttcaacaagctccccacgatgaagtgaagtttcagcacataagtatctaccagaagcagaaggt |
45243422 |
T |
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| Q |
221 |
ttctcataaacaagtatgtgagctaatgc |
249 |
Q |
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| T |
45243421 |
ttctcataaacaagtatgtgagctaatgc |
45243393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 864351 - 864227
Alignment:
| Q |
110 |
acttacttggtaggaattgggtactcagggaaatacttagcaagaatttcaacaagttccccacgatgaagtgaactttcagcacataagtatctaccag |
209 |
Q |
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|||||||||||||||| |||||||||||| |||||||| || | ||||||||||| || |||||||| | | | ||||| ||||| ||||||||||| |
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| T |
864351 |
acttacttggtaggaagtgggtactcaggaaaatacttggccaaaatttcaacaacctcaccacgatgcaaagcagtttcacaacatatgtatctaccag |
864252 |
T |
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| Q |
210 |
aagcagaaggtttctcataaacaag |
234 |
Q |
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| T |
864251 |
aagcagaatttgtctcataaacaag |
864227 |
T |
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