View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20634_low_46 (Length: 254)
Name: NF20634_low_46
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20634_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 9669877 - 9669622
Alignment:
| Q |
1 |
tttttctctagtatcttctaatattcttaacaagtacaccttagttttgnnnnnnnn-------------attgtattctatggtataaacgtatattcc |
87 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9669877 |
tttttctctagtatcttctaatattcttaacaagtacaccttagttttgttttttttttgttttttttttattgtattctatggtataaacgtatattcc |
9669778 |
T |
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| Q |
88 |
ctaggtgacttcaccataaattcaatttgggaannnnnnnatttcattcctattcaacatgaatctctgtgtctataatcaattataaattttggaactt |
187 |
Q |
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| T |
9669777 |
ctaggtgacttcaccataaatacaatttgggaatttttt-atttcattcctattcaacatgaatctctgtgtctataatcaattataaattttggaactt |
9669679 |
T |
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| Q |
188 |
gttgggtcaatactctacattactttctgcttgatttgatttgatacgctttctctg |
244 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9669678 |
gttgggtcaatactctacattaccttctgcttgatttgatttgatacgctttctctg |
9669622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 34329368 - 34329465
Alignment:
| Q |
18 |
ctaatattcttaacaagta---caccttagttttgnnnnnnnnattgtattctatggtataaacgtatattccctaggtgacttcaccataaattcaa |
112 |
Q |
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||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||| |||||||||| |
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| T |
34329368 |
ctaatattcttaacaagtagtacaccttagttttgtttttttgattgtattctatggtataaacgcatattccctaggtggcttcactataaattcaa |
34329465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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