View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20634_low_49 (Length: 241)

Name: NF20634_low_49
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20634_low_49
NF20634_low_49
[»] chr2 (15 HSPs)
chr2 (43-163)||(22042701-22042822)
chr2 (50-157)||(22016285-22016389)
chr2 (181-222)||(10602019-10602060)
chr2 (175-222)||(32527117-32527165)
chr2 (180-222)||(3037662-3037705)
chr2 (180-211)||(34376555-34376586)
chr2 (187-222)||(36413780-36413815)
chr2 (175-222)||(44132603-44132650)
chr2 (182-212)||(13294434-13294464)
chr2 (180-222)||(14307734-14307776)
chr2 (180-222)||(26975338-26975380)
chr2 (180-222)||(39334921-39334963)
chr2 (182-222)||(29034990-29035031)
chr2 (182-222)||(29664617-29664658)
chr2 (175-222)||(11133083-11133131)
[»] scaffold0168 (1 HSPs)
scaffold0168 (175-222)||(34073-34120)
[»] chr6 (17 HSPs)
chr6 (175-222)||(34524883-34524930)
chr6 (180-222)||(10455755-10455797)
chr6 (180-222)||(30833030-30833072)
chr6 (180-221)||(4844156-4844197)
chr6 (180-222)||(8253630-8253672)
chr6 (180-222)||(19680288-19680330)
chr6 (180-222)||(20858423-20858465)
chr6 (175-212)||(9031774-9031811)
chr6 (175-222)||(2945603-2945651)
chr6 (175-215)||(8309172-8309212)
chr6 (175-222)||(9064873-9064921)
chr6 (175-222)||(14981742-14981790)
chr6 (182-222)||(3448366-3448407)
chr6 (175-212)||(17176157-17176194)
chr6 (182-222)||(1488103-1488143)
chr6 (182-222)||(11520732-11520772)
chr6 (180-212)||(22730752-22730784)
[»] chr4 (32 HSPs)
chr4 (175-222)||(20610747-20610794)
chr4 (175-222)||(20166324-20166371)
chr4 (175-222)||(41492538-41492585)
chr4 (175-222)||(36008282-36008330)
chr4 (175-222)||(27921904-27921951)
chr4 (175-222)||(49039485-49039532)
chr4 (180-222)||(56900-56942)
chr4 (180-222)||(4419726-4419768)
chr4 (175-222)||(14149800-14149848)
chr4 (181-221)||(15185092-15185132)
chr4 (175-222)||(28520771-28520819)
chr4 (180-212)||(38657553-38657585)
chr4 (180-212)||(42432021-42432053)
chr4 (175-222)||(56531276-56531324)
chr4 (180-222)||(48968250-48968293)
chr4 (175-222)||(49319401-49319448)
chr4 (175-222)||(54854219-54854266)
chr4 (180-222)||(12585599-12585641)
chr4 (180-222)||(15853835-15853877)
chr4 (180-222)||(17431390-17431432)
chr4 (180-222)||(37997886-37997928)
chr4 (180-218)||(49743375-49743413)
chr4 (180-221)||(12796679-12796720)
chr4 (180-217)||(14504678-14504715)
chr4 (180-221)||(44449508-44449549)
chr4 (178-222)||(9062187-9062231)
chr4 (175-218)||(9084766-9084810)
chr4 (175-222)||(9692969-9693017)
chr4 (175-214)||(31480278-31480318)
chr4 (175-214)||(48512206-48512246)
chr4 (175-211)||(53180403-53180439)
chr4 (175-222)||(53815703-53815751)
[»] chr1 (33 HSPs)
chr1 (175-222)||(18003824-18003871)
chr1 (175-222)||(9768849-9768896)
chr1 (175-222)||(42908779-42908826)
chr1 (175-222)||(52961122-52961169)
chr1 (180-222)||(50199516-50199558)
chr1 (175-219)||(3341779-3341823)
chr1 (180-222)||(7906366-7906408)
chr1 (180-222)||(18179341-18179383)
chr1 (175-219)||(12553201-12553245)
chr1 (175-222)||(17350068-17350116)
chr1 (175-222)||(40678830-40678878)
chr1 (175-218)||(1721148-1721191)
chr1 (175-222)||(5862136-5862183)
chr1 (175-221)||(9527433-9527480)
chr1 (175-221)||(13870122-13870169)
chr1 (175-222)||(47645836-47645883)
chr1 (175-222)||(50575909-50575956)
chr1 (180-222)||(52833146-52833189)
chr1 (175-221)||(2643856-2643902)
chr1 (180-222)||(2903067-2903109)
chr1 (180-222)||(3569057-3569099)
chr1 (180-222)||(47141846-47141888)
chr1 (177-218)||(1576165-1576206)
chr1 (181-222)||(43020625-43020666)
chr1 (190-222)||(1660966-1660998)
chr1 (175-222)||(2052722-2052770)
chr1 (180-212)||(13941332-13941364)
chr1 (175-222)||(19976592-19976640)
chr1 (175-222)||(29491477-29491525)
chr1 (175-222)||(30632424-30632472)
chr1 (180-212)||(37262155-37262187)
chr1 (175-222)||(39238723-39238771)
chr1 (175-222)||(47763425-47763473)
[»] chr7 (29 HSPs)
chr7 (175-222)||(35195851-35195898)
chr7 (180-222)||(38032895-38032937)
chr7 (175-222)||(21285393-21285441)
chr7 (175-222)||(7465474-7465521)
chr7 (175-222)||(32309188-32309235)
chr7 (175-216)||(17305436-17305477)
chr7 (180-217)||(43209414-43209451)
chr7 (182-222)||(7162708-7162748)
chr7 (182-222)||(11808053-11808093)
chr7 (175-222)||(20527469-20527517)
chr7 (175-222)||(38451870-38451918)
chr7 (186-222)||(47355828-47355864)
chr7 (175-222)||(10020509-10020556)
chr7 (175-222)||(27726409-27726456)
chr7 (175-222)||(37995586-37995632)
chr7 (180-222)||(14772375-14772417)
chr7 (180-222)||(15222827-15222869)
chr7 (180-218)||(23799313-23799351)
chr7 (180-222)||(43712353-43712395)
chr7 (180-213)||(1513500-1513533)
chr7 (180-213)||(24427376-24427409)
chr7 (193-222)||(29658312-29658341)
chr7 (180-213)||(35498411-35498444)
chr7 (175-222)||(14818405-14818453)
chr7 (175-222)||(15265403-15265451)
chr7 (175-211)||(19837362-19837398)
chr7 (175-222)||(31475880-31475928)
chr7 (175-222)||(41139094-41139142)
chr7 (180-216)||(42181523-42181559)
[»] chr3 (28 HSPs)
chr3 (175-222)||(16874230-16874277)
chr3 (175-222)||(21142773-21142820)
chr3 (175-222)||(2903716-2903763)
chr3 (175-222)||(19137627-19137674)
chr3 (180-222)||(51412030-51412072)
chr3 (175-216)||(3973310-3973351)
chr3 (175-216)||(3996525-3996566)
chr3 (175-216)||(4010064-4010105)
chr3 (180-221)||(24130572-24130613)
chr3 (166-222)||(27119274-27119331)
chr3 (175-222)||(9624990-9625038)
chr3 (175-222)||(14868692-14868740)
chr3 (175-222)||(27183721-27183769)
chr3 (175-222)||(43774192-43774240)
chr3 (175-211)||(51017798-51017834)
chr3 (182-221)||(40160750-40160789)
chr3 (187-221)||(3993748-3993782)
chr3 (180-222)||(4045674-4045716)
chr3 (175-209)||(12143460-12143494)
chr3 (175-213)||(12236607-12236645)
chr3 (180-222)||(24160568-24160610)
chr3 (180-222)||(31108800-31108842)
chr3 (180-222)||(34407130-34407172)
chr3 (181-222)||(16999942-16999983)
chr3 (175-208)||(30745785-30745818)
chr3 (193-222)||(42271053-42271082)
chr3 (186-222)||(26583120-26583156)
chr3 (175-219)||(43911622-43911666)
[»] chr8 (15 HSPs)
chr8 (180-222)||(14011078-14011120)
chr8 (175-222)||(1588774-1588822)
chr8 (180-222)||(14012624-14012667)
chr8 (179-222)||(22847302-22847345)
chr8 (175-222)||(26657864-26657911)
chr8 (175-222)||(2800026-2800074)
chr8 (180-222)||(2696545-2696588)
chr8 (175-222)||(29937218-29937265)
chr8 (175-222)||(39432368-39432415)
chr8 (180-218)||(7345441-7345479)
chr8 (180-222)||(18577126-18577168)
chr8 (189-222)||(41793013-41793046)
chr8 (182-222)||(4955023-4955063)
chr8 (175-222)||(35301203-35301251)
chr8 (180-219)||(38790616-38790656)
[»] chr5 (18 HSPs)
chr5 (175-219)||(11246537-11246581)
chr5 (175-218)||(25660920-25660963)
chr5 (175-222)||(38040274-38040321)
chr5 (175-222)||(42781634-42781681)
chr5 (180-222)||(3535976-3536018)
chr5 (180-221)||(20186879-20186920)
chr5 (175-222)||(1463878-1463926)
chr5 (180-222)||(6447520-6447563)
chr5 (175-214)||(35813290-35813329)
chr5 (180-222)||(17557043-17557085)
chr5 (180-222)||(38040132-38040174)
chr5 (189-222)||(28537157-28537190)
chr5 (185-222)||(31556836-31556873)
chr5 (180-213)||(31907664-31907697)
chr5 (180-221)||(41405129-41405170)
chr5 (175-222)||(9963423-9963471)
chr5 (175-222)||(20735215-20735263)
chr5 (186-222)||(31292548-31292584)
[»] scaffold0712 (1 HSPs)
scaffold0712 (175-213)||(4528-4566)
[»] scaffold0709 (1 HSPs)
scaffold0709 (175-213)||(4548-4586)
[»] scaffold0126 (1 HSPs)
scaffold0126 (180-222)||(25001-25043)
[»] scaffold0002 (1 HSPs)
scaffold0002 (175-222)||(440407-440454)
[»] scaffold1343 (1 HSPs)
scaffold1343 (180-217)||(922-959)
[»] scaffold0247 (1 HSPs)
scaffold0247 (180-221)||(20736-20777)
[»] scaffold0036 (1 HSPs)
scaffold0036 (175-222)||(25033-25081)


Alignment Details
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 43 - 163
Target Start/End: Original strand, 22042701 - 22042822
Alignment:
Q  43 gtatcgttataaccaaaatgagtataatttaatagcttgat-aaaaaacacatatactatcaaactacttgtccatttgaaacattgtgtagactaaata 141  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||    
T  22042701 gtatcgttataaccgaaatgagtataatttaatagcttgatcaaaaaacacaaatactatcaaactacttctccagttgaaacattgtgtagactaaata 22042800  T
Q  142 accgctatagaaataataaaaa 163  Q
    |||  |||||||||||||||||    
T  22042801 acccttatagaaataataaaaa 22042822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 50 - 157
Target Start/End: Complemental strand, 22016389 - 22016285
Alignment:
Q  50 tataaccaaaatgagtataatttaatagcttgataaaaaacacatatactatcaaactacttgtccatttgaaacattgtgtagactaaataaccgctat 149  Q
    ||||| ||||||||||||| |||||||| ||||||||||||||| |||   |||||||||||||||||||||||||| | ||||||||||||||| ||||    
T  22016389 tataatcaaaatgagtatagtttaataggttgataaaaaacacaaata---tcaaactacttgtccatttgaaacatcgggtagactaaataacctctat 22016293  T
Q  150 agaaataa 157  Q
    | ||||||    
T  22016292 acaaataa 22016285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 10602019 - 10602060
Alignment:
Q  181 gttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||||| |||||||||||||||||||||||| ||||||||    
T  10602019 gttggcagagacatgcattgttatatgcaggggacggggttc 10602060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 32527165 - 32527117
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||| ||||||||||||||||||||||    
T  32527165 agctcagttggcagggacaatgcattattatatgcaggggccggggttc 32527117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 3037705 - 3037662
Alignment:
Q  180 agttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    ||||||| |||||| |||||||||||||||||||||||||||||    
T  3037705 agttggctgggacaatgcattgttatatgcaggggccggggttc 3037662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 211
Target Start/End: Original strand, 34376555 - 34376586
Alignment:
Q  180 agttggcagggacatgcattgttatatgcagg 211  Q
    ||||||||||||||||||||||||||||||||    
T  34376555 agttggcagggacatgcattgttatatgcagg 34376586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 36413780 - 36413815
Alignment:
Q  187 agggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||||||||||||||||||||||||||||| ||||    
T  36413780 agggacatgcattgttatatgcaggggccggagttc 36413815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 44132650 - 44132603
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| ||||||||| ||||||||||||||||||||| || ||||||||    
T  44132650 agctcagttggcagagacatgcattgttatatgcagaggtcggggttc 44132603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 212
Target Start/End: Complemental strand, 13294464 - 13294434
Alignment:
Q  182 ttggcagggacatgcattgttatatgcaggg 212  Q
    |||||||||||||||||||||||||||||||    
T  13294464 ttggcagggacatgcattgttatatgcaggg 13294434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 14307776 - 14307734
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||| ||||||||||||||||||||||||||| || |||||    
T  14307776 agttggtagggacatgcattgttatatgcaggggtcgaggttc 14307734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 26975380 - 26975338
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||||||||||||||||||| ||||||||| ||| |||||||    
T  26975380 agttggcagggacatgcattgctatatgcagaggctggggttc 26975338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 39334963 - 39334921
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||||||||||||||||| |||||| ||||||| |||||||    
T  39334963 agttggcagggacatgcattattatatacaggggctggggttc 39334921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 29034990 - 29035031
Alignment:
Q  182 ttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  29034990 ttggcagggacaatgcattattatatgcaggggccggggttc 29035031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 29664617 - 29664658
Alignment:
Q  182 ttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||||||||||| |||||||||||||||||||| ||||||||    
T  29664617 ttggcagggacaatgcattgttatatgcaggggtcggggttc 29664658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 11133083 - 11133131
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||| ||||||| |||||||||||||||||||| ||||||||    
T  11133083 agctcagttggtagggacaatgcattgttatatgcaggggtcggggttc 11133131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 34120 - 34073
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  34120 agctcagttggcagggacatgcattgttatatgcaggggccggggttc 34073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 34524883 - 34524930
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  34524883 agctcagttggcagggacatgcattgttatatgcaggggccggggttc 34524930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 10455755 - 10455797
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  10455755 agttggcaggaacatgcattgttatatgcaggggccggggttc 10455797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 30833030 - 30833072
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  30833030 agttggcagggacatgcattgttatatgcaggggtcggggttc 30833072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 4844156 - 4844197
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggtt 221  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  4844156 agttggcagggacatgcattgttatatgcaggggtcggggtt 4844197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 8253672 - 8253630
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||||| |||||||||||||||||||||||||| |||||||    
T  8253672 agttggcatggacatgcattgttatatgcaggggctggggttc 8253630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 19680330 - 19680288
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||||| ||||||||||||||||||||||| ||||||||||    
T  19680330 agttggcatggacatgcattgttatatgcaggagccggggttc 19680288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 20858465 - 20858423
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||||||||||||||||||||||||||||||||  |||||||    
T  20858465 agttggcagggacatgcattgttatatgcaggggttggggttc 20858423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 9031774 - 9031811
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggg 212  Q
    |||| |||||||||||||||||||||||||||||||||    
T  9031774 agctcagttggcagggacatgcattgttatatgcaggg 9031811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 2945603 - 2945651
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||||||||||||||||| ||||||||    
T  2945603 agctcagttggcagggacaatgcattgttatatgcaggggtcggggttc 2945651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 8309172 - 8309212
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggcc 215  Q
    |||| |||||||||||||||||||||||||||||| |||||    
T  8309172 agctcagttggcagggacatgcattgttatatgcatgggcc 8309212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 9064873 - 9064921
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||| ||||||||||||||||||||||    
T  9064873 agctcagttggcagggacaatgcattattatatgcaggggccggggttc 9064921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 14981790 - 14981742
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||| ||||||||||||||||||||||    
T  14981790 agctcagttggcagggacaatgcattattatatgcaggggccggggttc 14981742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 3448366 - 3448407
Alignment:
Q  182 ttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||||||||||| |||||||||||| ||||||||||||||||    
T  3448366 ttggcagggacaatgcattgttatacgcaggggccggggttc 3448407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 17176157 - 17176194
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggg 212  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  17176157 agctcagttgacagggacatgcattgttatatgcaggg 17176194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 1488103 - 1488143
Alignment:
Q  182 ttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||||| ||||||||||||||||||||| || ||||||||    
T  1488103 ttggcagagacatgcattgttatatgcagaggtcggggttc 1488143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 11520732 - 11520772
Alignment:
Q  182 ttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||||||| ||||||| |||||||||| |||||||||||    
T  11520732 ttggcagggatatgcattcttatatgcagtggccggggttc 11520772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 22730784 - 22730752
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggg 212  Q
    ||||||||| |||||||||||||||||||||||    
T  22730784 agttggcagagacatgcattgttatatgcaggg 22730752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 20610747 - 20610794
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  20610747 agctcagttggcagggacatgcattgttatatgcaggggccggggttc 20610794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 20166324 - 20166371
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||    
T  20166324 agctcagttggcagggacatgcattgttatatgcaggggccgaggttc 20166371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 41492585 - 41492538
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||    
T  41492585 agctcagttggcagggacatgcattattatatgcaggggccggggttc 41492538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 36008282 - 36008330
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||    
T  36008282 agctcagttggcagggacaatgcattgttatatgcaggggccggggttc 36008330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 27921904 - 27921951
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||| ||||||||||||| ||||||||||||||||||||||    
T  27921904 agctcagttggtagggacatgcattattatatgcaggggccggggttc 27921951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 49039532 - 49039485
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| ||||||||||||||||||||||||||||||||| | |||||||    
T  49039532 agctcagttggcagggacatgcattgttatatgcagggactggggttc 49039485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 56942 - 56900
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||||||||||||||||||||||||||| ||||||| ||||    
T  56942 agttggcagggacatgcattgttatatgcaagggccggagttc 56900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 4419768 - 4419726
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||| ||| |||||||||||||||||||||||||||||||||    
T  4419768 agttgtcagagacatgcattgttatatgcaggggccggggttc 4419726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 14149800 - 14149848
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||| ||||||||||||||||||||||    
T  14149800 agctcagttggcagggacaatgcattattatatgcaggggccggggttc 14149848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 15185092 - 15185132
Alignment:
Q  181 gttggcagggacatgcattgttatatgcaggggccggggtt 221  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  15185092 gttggcagggatatgcattgttatatgcaggggtcggggtt 15185132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 28520819 - 28520771
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||| ||||||||||||||||||||||    
T  28520819 agctcagttggcagggacaatgcattattatatgcaggggccggggttc 28520771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 38657553 - 38657585
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggg 212  Q
    |||||||||||||||||||||||||||||||||    
T  38657553 agttggcagggacatgcattgttatatgcaggg 38657585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 42432021 - 42432053
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggg 212  Q
    |||||||||||||||||||||||||||||||||    
T  42432021 agttggcagggacatgcattgttatatgcaggg 42432053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 56531324 - 56531276
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||| ||||| |||||||||||||||||||||||||||||    
T  56531324 agctcagttggcaaggacaatgcattgttatatgcaggggccggggttc 56531276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 48968293 - 48968250
Alignment:
Q  180 agttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||||||||||||| |||||| ||||||||||||||||||||||    
T  48968293 agttggcagggacaatgcattattatatgcaggggccggggttc 48968250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 49319401 - 49319448
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||| ||||||||||| ||||||||||||| ||||||||    
T  49319401 agctcagttggcatggacatgcattattatatgcaggggtcggggttc 49319448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 54854266 - 54854219
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||||||||  |||||||||||||| |||||||    
T  54854266 agctcagttggcagggacatgcataattatatgcaggggctggggttc 54854219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 12585641 - 12585599
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||||||||||||||||||||||||| | ||||||| ||||    
T  12585641 agttggcagggacatgcattgttatatgtaagggccggagttc 12585599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 15853835 - 15853877
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||||||| |||||||||||||||| ||||||| |||||||    
T  15853835 agttggcaggaacatgcattgttatatacaggggctggggttc 15853877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 17431390 - 17431432
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||    
T  17431390 agttgacagggacatgcattgttatatgcagaggcccgggttc 17431432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 37997928 - 37997886
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||||||||||||| ||||||||||||||||| | |||||||    
T  37997928 agttggcagggacattcattgttatatgcagggtctggggttc 37997886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 49743375 - 49743413
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggg 218  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  49743375 agttggcagggatatgcattattatatgcaggggccggg 49743413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 12796679 - 12796720
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggtt 221  Q
    |||||||||| |||| |||||||||||||||||| |||||||    
T  12796679 agttggcaggaacatacattgttatatgcaggggacggggtt 12796720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 14504715 - 14504678
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccgg 217  Q
    |||||||| | |||||||||||||||||||||||||||    
T  14504715 agttggcaagaacatgcattgttatatgcaggggccgg 14504678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 44449549 - 44449508
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggtt 221  Q
    |||| ||||| ||||||||||||||||| |||||||||||||    
T  44449549 agttagcaggaacatgcattgttatatgtaggggccggggtt 44449508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 9062187 - 9062231
Alignment:
Q  178 ttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||||||||||||||||||| ||||||||| |||  |||||||    
T  9062187 ttagttggcagggacatgcattattatatgcaagggttggggttc 9062231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 9084766 - 9084810
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggg 218  Q
    |||| |||||||||||||| |||||||||||||||||||| ||||    
T  9084766 agctcagttggcagggacaatgcattgttatatgcaggggtcggg 9084810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 9692969 - 9693017
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||| | |||||| ||||||||||||||||||||||    
T  9692969 agctcagttggcagggataatgcattattatatgcaggggccggggttc 9693017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 31480278 - 31480318
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggc 214  Q
    |||| |||||||||||||| |||||||||||||||||||||    
T  31480278 agctcagttggcagggacaatgcattgttatatgcaggggc 31480318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 48512206 - 48512246
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggc 214  Q
    |||| |||||||||||||| |||||||||||||||||||||    
T  48512206 agctcagttggcagggacaatgcattgttatatgcaggggc 48512246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 53180439 - 53180403
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcagg 211  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  53180439 agcttagttgacagggacatgcattgttatatacagg 53180403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 53815703 - 53815751
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||| |||||||||||||| |||||||    
T  53815703 agctcagttggcagggacaatgcattattatatgcaggggctggggttc 53815751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 18003824 - 18003871
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  18003824 agctcagttggcagggacatgcattgttatatgcaggggccggggttc 18003871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 9768896 - 9768849
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||    
T  9768896 agctcagttggcagggacatgcattgttatatgcaggggtcggggttc 9768849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 42908779 - 42908826
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||    
T  42908779 agctcagttggcagggacatgcattgttatatgcaggggtcggggttc 42908826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 52961169 - 52961122
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  52961169 agctcagttggcaaggacatgcattgttatatgcaggggccggggttc 52961122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 50199558 - 50199516
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  50199558 agttggtagggacatgcattgttatatgcaggggccggggttc 50199516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 3341823 - 3341779
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccgggg 219  Q
    |||| |||||||||||||||||||| |||||||||||||||||||    
T  3341823 agctcagttggcagggacatgcattattatatgcaggggccgggg 3341779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 7906408 - 7906366
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||| |||||||||||||||||||||||||||| |||||||    
T  7906408 agttggtagggacatgcattgttatatgcaggggctggggttc 7906366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 18179341 - 18179383
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  18179341 agttggcagggacatgcattgttatatgcagggaccggagttc 18179383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 12553201 - 12553245
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccgggg 219  Q
    |||| |||||| ||| |||||||||||||||||||||||||||||    
T  12553201 agctcagttggtaggaacatgcattgttatatgcaggggccgggg 12553245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 17350068 - 17350116
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||| ||||||||||||||||||||||    
T  17350068 agctcagttggcagggacaatgcattattatatgcaggggccggggttc 17350116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 40678830 - 40678878
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||| ||||||||||||||||||||||    
T  40678830 agctcagttggcagggacaatgcattattatatgcaggggccggggttc 40678878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 1721148 - 1721191
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggg 218  Q
    |||| |||||| ||| ||||||||||||||||||||||||||||    
T  1721148 agctcagttggtaggaacatgcattgttatatgcaggggccggg 1721191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 5862136 - 5862183
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||||||||||||||||| || || ||||||||    
T  5862136 agctcagttggcagggacatgcattgttatatgtagaggtcggggttc 5862183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 9527433 - 9527480
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggtt 221  Q
    |||| |||||||||||||| |||||||||||||||||||| |||||||    
T  9527433 agctcagttggcagggacaatgcattgttatatgcaggggtcggggtt 9527480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 13870169 - 13870122
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggtt 221  Q
    |||| |||||||||||||| |||||| |||||||||||||||||||||    
T  13870169 agctcagttggcagggacaatgcattattatatgcaggggccggggtt 13870122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 47645883 - 47645836
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| ||||||||| ||||||||||||||||||||| || ||||||||    
T  47645883 agctcagttggcagagacatgcattgttatatgcagaggtcggggttc 47645836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 50575909 - 50575956
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||| ||||||||||||||||||||||| |||| |||||||    
T  50575909 agctcagttggaagggacatgcattgttatatgcaagggctggggttc 50575956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 52833189 - 52833146
Alignment:
Q  180 agttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||||||||||||| |||||| ||||||||||||||||||||||    
T  52833189 agttggcagggacaatgcattattatatgcaggggccggggttc 52833146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 2643902 - 2643856
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggtt 221  Q
    |||||||||||||| |||||||||| ||||||||| ||| |||||||    
T  2643902 agcttagttggcagagacatgcattattatatgcatgggtcggggtt 2643856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 2903109 - 2903067
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||| ||||||||||||||||||||||||| || ||||||||    
T  2903109 agttgccagggacatgcattgttatatgcagaggtcggggttc 2903067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 3569057 - 3569099
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||||||||||||||||||||||||| ||||| | ||||||    
T  3569057 agttggcagggacatgcattgttatatgtaggggtcagggttc 3569099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 47141888 - 47141846
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||| |||||||||||||||||||||||||||| ||| ||||    
T  47141888 agttgacagggacatgcattgttatatgcaggggtcggagttc 47141846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 1576206 - 1576165
Alignment:
Q  177 cttagttggcagggacatgcattgttatatgcaggggccggg 218  Q
    ||||||||||||||| |||| || ||||||||||||||||||    
T  1576206 cttagttggcagggatatgctttattatatgcaggggccggg 1576165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 43020625 - 43020666
Alignment:
Q  181 gttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||||||||||||||||| |||||||||||||  |||||||    
T  43020625 gttggcagggacatgcattattatatgcaggggttggggttc 43020666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 1660966 - 1660998
Alignment:
Q  190 gacatgcattgttatatgcaggggccggggttc 222  Q
    |||||||||| ||||||||||||||||||||||    
T  1660966 gacatgcattattatatgcaggggccggggttc 1660998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 2052770 - 2052722
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||| | ||||||||||||||||||||    
T  2052770 agctcagttggcagggacaatgcattatcatatgcaggggccggggttc 2052722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 13941332 - 13941364
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggg 212  Q
    |||||||| ||||||||||||||||||||||||    
T  13941332 agttggcaaggacatgcattgttatatgcaggg 13941364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 19976640 - 19976592
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| || || |||||||||||||||||||||||    
T  19976640 agctcagttggcagggacaatgtatggttatatgcaggggccggggttc 19976592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 29491477 - 29491525
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||| ||||||||||||| ||||||||    
T  29491477 agctcagttggcagggacaatgcattattatatgcaggggtcggggttc 29491525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 30632472 - 30632424
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| ||||| |||||||| ||||||||||||||||||||||| |||||    
T  30632472 agctcagttgacagggacaatgcattgttatatgcaggggccgaggttc 30632424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 37262187 - 37262155
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggg 212  Q
    ||||||||||||||||| |||||||||||||||    
T  37262187 agttggcagggacatgcgttgttatatgcaggg 37262155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 39238723 - 39238771
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||| |||||||||||||||| |||||    
T  39238723 agctcagttggcagggacaatgcattattatatgcaggggccgaggttc 39238771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 47763473 - 47763425
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||| ||||||||||||||||| ||||    
T  47763473 agctcagttggcagggacaatgcattattatatgcaggggccggagttc 47763425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 35195851 - 35195898
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||    
T  35195851 agctcagttggcagggacatgcattattatatgcaggggccggggttc 35195898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 38032937 - 38032895
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  38032937 agttggcagggacatgcattgttatatacaggggccggggttc 38032895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 21285441 - 21285393
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||    
T  21285441 agctcagttggcagggacaatgcattgttatatgcaggggccggggttc 21285393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 7465474 - 7465521
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| ||||||||| |||||||||| ||||||||||||||||||||||    
T  7465474 agctcagttggcagagacatgcattattatatgcaggggccggggttc 7465521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 32309235 - 32309188
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||| ||||||||||||||||||||||||||||||||| ||| ||||    
T  32309235 agcttggttggcagggacatgcattgttatatgcaggggtcggagttc 32309188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 17305477 - 17305436
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccg 216  Q
    |||| |||||||||||||||||||||||||||||| ||||||    
T  17305477 agctcagttggcagggacatgcattgttatatgcaagggccg 17305436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 43209414 - 43209451
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccgg 217  Q
    |||||||||| |||||||||||||||||||||||||||    
T  43209414 agttggcaggaacatgcattgttatatgcaggggccgg 43209451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 7162748 - 7162708
Alignment:
Q  182 ttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  7162748 ttggcagggatatgcattgttatatgcaggggtcggggttc 7162708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 11808053 - 11808093
Alignment:
Q  182 ttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  11808053 ttggtagggacatgcattgttatatgcaggggtcggggttc 11808093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 20527517 - 20527469
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||||||||||||||||||||| ||||    
T  20527517 agctcagttggcagggacaatgcattgttatatgcaggggccggagttc 20527469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 38451870 - 38451918
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  38451870 agctcagttgacagggacaatgcattgttatatgcaggggccggggttc 38451918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 47355828 - 47355864
Alignment:
Q  186 cagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||| ||||||||||||||||||||||||||||||    
T  47355828 cagggatatgcattgttatatgcaggggccggggttc 47355864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 10020556 - 10020509
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| ||||| ||||||||||||||||||||||||||||  |||||||    
T  10020556 agctcagttgacagggacatgcattgttatatgcaggggttggggttc 10020509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 27726456 - 27726409
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||||||||| ||||| |||| |||||||||||    
T  27726456 agctcagttggcagggacatgcattattataagcagtggccggggttc 27726409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 37995632 - 37995586
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| ||||||||| ||||||||| |||||||||||||||||||||||    
T  37995632 agctcagttggcagagacatgcat-gttatatgcaggggccggggttc 37995586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 14772417 - 14772375
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||||||| |||||||||||||| ||| ||||||||||||||    
T  14772417 agttggcagagacatgcattgttacatgtaggggccggggttc 14772375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 15222869 - 15222827
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||||||| |||||||||||||| ||| ||||||||||||||    
T  15222869 agttggcagagacatgcattgttacatgtaggggccggggttc 15222827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 23799313 - 23799351
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggg 218  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  23799313 agttggcagagacatgcattgttatatgcaggggtcggg 23799351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 43712395 - 43712353
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||| |||||||||||||||||||| |||||| ||||||||    
T  43712395 agttggtagggacatgcattgttatatacaggggtcggggttc 43712353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 1513500 - 1513533
Alignment:
Q  180 agttggcagggacatgcattgttatatgcagggg 213  Q
    |||||||||||||||||||||||||||| |||||    
T  1513500 agttggcagggacatgcattgttatatgtagggg 1513533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 24427376 - 24427409
Alignment:
Q  180 agttggcagggacatgcattgttatatgcagggg 213  Q
    ||||||||| ||||||||||||||||||||||||    
T  24427376 agttggcagagacatgcattgttatatgcagggg 24427409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 222
Target Start/End: Complemental strand, 29658341 - 29658312
Alignment:
Q  193 atgcattgttatatgcaggggccggggttc 222  Q
    ||||||||||||||||||||||||||||||    
T  29658341 atgcattgttatatgcaggggccggggttc 29658312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 35498411 - 35498444
Alignment:
Q  180 agttggcagggacatgcattgttatatgcagggg 213  Q
    |||||||||||||||||||| |||||||||||||    
T  35498411 agttggcagggacatgcattattatatgcagggg 35498444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 14818453 - 14818405
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||| ||||||||||||| ||||||||    
T  14818453 agctcagttggcagggacagtgcattattatatgcaggggtcggggttc 14818405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 15265451 - 15265403
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||| ||||||||||||| ||||||||    
T  15265451 agctcagttggcagggacagtgcattattatatgcaggggtcggggttc 15265403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 19837398 - 19837362
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcagg 211  Q
    |||||||||| || |||||||||||||||||||||||    
T  19837398 agcttagttgacatggacatgcattgttatatgcagg 19837362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 31475928 - 31475880
Alignment:
Q  175 agcttagttggcagggacat-gcattgttatatgcaggggccggggttc 222  Q
    |||| ||||||||||||||| ||||| |||||||||||||| |||||||    
T  31475928 agctcagttggcagggacattgcattattatatgcaggggctggggttc 31475880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 41139094 - 41139142
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||| ||||||||||||| ||||||||    
T  41139094 agctcagttggcagggacaatgcattattatatgcaggggtcggggttc 41139142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 42181559 - 42181523
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccg 216  Q
    ||||| || ||||||||||||||||||||||||||||    
T  42181559 agttgacaaggacatgcattgttatatgcaggggccg 42181523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 16874277 - 16874230
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||    
T  16874277 agctcagttggcagggacatgcattgttatatgcaggggccgaggttc 16874230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 21142820 - 21142773
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||    
T  21142820 agcttagttggtagggacgtgcattgttatatgcaggggccggggttc 21142773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 2903716 - 2903763
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||||||    
T  2903716 agcttagttggcatggacatacattgttatatgcaggggctggggttc 2903763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 19137627 - 19137674
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||| |||||||||||||||||||||||||| |||||    
T  19137627 agctcagttggcaggaacatgcattgttatatgcaggggccgaggttc 19137674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 51412072 - 51412030
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||||||||||||||||||||||||||||| | ||||||||    
T  51412072 agttggcagggacatgcattgttatatgcaggagtcggggttc 51412030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 3973310 - 3973351
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccg 216  Q
    |||| |||||| ||||||||||||||||||||||||||||||    
T  3973310 agctcagttggtagggacatgcattgttatatgcaggggccg 3973351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 3996566 - 3996525
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccg 216  Q
    |||| |||||| ||||||||||||||||||||||||||||||    
T  3996566 agctcagttggtagggacatgcattgttatatgcaggggccg 3996525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 4010105 - 4010064
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccg 216  Q
    |||| |||||| ||||||||||||||||||||||||||||||    
T  4010105 agctcagttggtagggacatgcattgttatatgcaggggccg 4010064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 24130572 - 24130613
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggtt 221  Q
    ||||||||||||||| |||||||||||||||||| |||||||    
T  24130572 agttggcagggacatacattgttatatgcaggggacggggtt 24130613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 27119274 - 27119331
Alignment:
Q  166 gtccccgtgagcttagtt-ggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||||||||| ||| | ||||||||||||||||||||||||||| || ||||||||    
T  27119274 gtccccgtgagcatagctcggcagggacatgcattgttatatgcagaggtcggggttc 27119331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 9624990 - 9625038
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||| ||||||||||||||||||||||    
T  9624990 agctcagttggcagggacaatgcattattatatgcaggggccggggttc 9625038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 14868692 - 14868740
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||| ||||||||||||||||||||||    
T  14868692 agctcagttggcagggacaatgcattattatatgcaggggccggggttc 14868740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 27183769 - 27183721
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||| ||||||||||||||||||||||    
T  27183769 agctcagttggcagggacaatgcattattatatgcaggggccggggttc 27183721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 43774192 - 43774240
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||||||||||||||||| ||||||||    
T  43774192 agctcagttggcagggacaatgcattgttatatgcaggggtcggggttc 43774240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 51017798 - 51017834
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcagg 211  Q
    |||| ||||||||||||||||||||||||||||||||    
T  51017798 agctcagttggcagggacatgcattgttatatgcagg 51017834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 40160750 - 40160789
Alignment:
Q  182 ttggcagggacatgcattgttatatgcaggggccggggtt 221  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  40160750 ttggcagggacatgcattgttatatgccggggctggggtt 40160789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 3993782 - 3993748
Alignment:
Q  187 agggacatgcattgttatatgcaggggccggggtt 221  Q
    |||||||||||||||||||||||||||||| ||||    
T  3993782 agggacatgcattgttatatgcaggggccgcggtt 3993748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 4045716 - 4045674
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||| |||||||||||||||||||||||||||| || |||||    
T  4045716 agttgacagggacatgcattgttatatgcaggggtcgaggttc 4045674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 12143494 - 12143460
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgca 209  Q
    |||| ||||||||||||||||||||||||||||||    
T  12143494 agctcagttggcagggacatgcattgttatatgca 12143460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 12236607 - 12236645
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcagggg 213  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  12236607 agctcagttggcagggacatgcattattatatgcagggg 12236645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 24160610 - 24160568
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||||||| |||||||| ||||||||||||||| ||||||||    
T  24160610 agttggcagagacatgcactgttatatgcaggggtcggggttc 24160568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 31108842 - 31108800
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||||||||||||||||  |||||||||||||| |||||||    
T  31108842 agttggcagggacatgcataattatatgcaggggctggggttc 31108800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 34407172 - 34407130
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||||||||||||||||| |||||||||||||  |||||||    
T  34407172 agttggcagggacatgcattattatatgcaggggttggggttc 34407130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 16999942 - 16999983
Alignment:
Q  181 gttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||    
T  16999942 gttggcagggacatgcattattatatgtaggggccggagttc 16999983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 30745818 - 30745785
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgc 208  Q
    |||| |||||||||||||||||||||||||||||    
T  30745818 agctcagttggcagggacatgcattgttatatgc 30745785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 222
Target Start/End: Complemental strand, 42271082 - 42271053
Alignment:
Q  193 atgcattgttatatgcaggggccggggttc 222  Q
    ||||||||||||||||||||||||||||||    
T  42271082 atgcattgttatatgcaggggccggggttc 42271053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 26583120 - 26583156
Alignment:
Q  186 cagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  26583120 cagggacatgcattattatatgcaggggtcggggttc 26583156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 43911622 - 43911666
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccgggg 219  Q
    |||||||||||||| |||||  ||||||||||||||||| |||||    
T  43911622 agcttagttggcagagacatatattgttatatgcaggggtcgggg 43911666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 14011120 - 14011078
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  14011120 agttggcagggacatgcattgttatatgcaggggccggagttc 14011078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 1588774 - 1588822
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  1588774 agcttagttggcagggacaatgcattattatatgcaggggccggggttc 1588822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 14012624 - 14012667
Alignment:
Q  180 agttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  14012624 agttggcagggacaatgcattgttatatgcaggggccggggttc 14012667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 22847345 - 22847302
Alignment:
Q  179 tagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||||||||||||||||||||||||||||||||| || |||||    
T  22847345 tagttggcagggacatgcattgttatatgcaggggtcgaggttc 22847302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 26657864 - 26657911
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||| |||||||||||||||||||||||||| |||||||||    
T  26657864 agctcagttggtagggacatgcattgttatatgcagggaccggggttc 26657911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 2800026 - 2800074
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||| ||||||||||||||||||||||    
T  2800026 agctcagttggcagggacaatgcattattatatgcaggggccggggttc 2800074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 2696545 - 2696588
Alignment:
Q  180 agttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||||||||||||| |||||| ||||||||||||||||||||||    
T  2696545 agttggcagggacaatgcattattatatgcaggggccggggttc 2696588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 29937218 - 29937265
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||| ||||||||| ||||||||||||||||||||| ||||    
T  29937218 agctcagttggtagggacatgtattgttatatgcaggggccggagttc 29937265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 39432415 - 39432368
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||||||| |||||||||||||||  |||||||    
T  39432415 agctcagttggcagggacatgcaatgttatatgcaggggttggggttc 39432368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 7345441 - 7345479
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggg 218  Q
    |||||||||||||||||||| ||||||||||||| ||||    
T  7345441 agttggcagggacatgcattattatatgcaggggtcggg 7345479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 18577126 - 18577168
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||| |||||||||| ||||||||||||||||| ||||||||    
T  18577126 agttgacagggacatgtattgttatatgcaggggtcggggttc 18577168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 41793046 - 41793013
Alignment:
Q  189 ggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||||||||||||||||||||| ||||||||||    
T  41793046 ggacatgcattgttatatgcaggagccggggttc 41793013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 4955063 - 4955023
Alignment:
Q  182 ttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||||| |||||| |||||||||||||||||||| |||||    
T  4955063 ttggcagagacatgtattgttatatgcaggggccgtggttc 4955023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 35301251 - 35301203
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||| ||||||||||||| ||||||||    
T  35301251 agctcagttggcagggacaatgcattattatatgcaggggtcggggttc 35301203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 38790656 - 38790616
Alignment:
Q  180 agttggcagggaca-tgcattgttatatgcaggggccgggg 219  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  38790656 agttggcagggacaatgcattattatatgcaggggccgggg 38790616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 11246581 - 11246537
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccgggg 219  Q
    |||| |||||||||||||||||||||||||||||||||| |||||    
T  11246581 agctcagttggcagggacatgcattgttatatgcaggggtcgggg 11246537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 25660920 - 25660963
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggg 218  Q
    |||| |||||||||||| ||||||||||||||||||||||||||    
T  25660920 agctcagttggcagggatatgcattgttatatgcaggggccggg 25660963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 38040274 - 38040321
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||||||||||||||||||||||| || |||||    
T  38040274 agctcagttggcagggacatgcattgttatatgcaggggtcgaggttc 38040321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 42781681 - 42781634
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||||||||||||||||||||||  ||||||||    
T  42781681 agctcagttggcagggacatgcattgttatatgcagggttcggggttc 42781634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 3536018 - 3535976
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||||||||||||||||||||||||| |||| ||||||||||    
T  3536018 agttggcagggacatgcattgttatatacaggagccggggttc 3535976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 20186879 - 20186920
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggtt 221  Q
    |||||||||||||||||||| ||||||||||||| |||||||    
T  20186879 agttggcagggacatgcattattatatgcaggggtcggggtt 20186920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 1463878 - 1463926
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||| ||||||||||||||||||||||    
T  1463878 agctcagttggcagggacaatgcattattatatgcaggggccggggttc 1463926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 6447563 - 6447520
Alignment:
Q  180 agttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||||||||||||| |||||| ||||||||||||||||||||||    
T  6447563 agttggcagggacaatgcattattatatgcaggggccggggttc 6447520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 35813329 - 35813290
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggc 214  Q
    |||| ||||| |||||||||||||||||||||||||||||    
T  35813329 agctcagttgacagggacatgcattgttatatgcaggggc 35813290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 17557043 - 17557085
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||||||| |||||||||||||||||| ||||| ||||||||    
T  17557043 agttggcagagacatgcattgttatatgtaggggtcggggttc 17557085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 38040174 - 38040132
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||||| ||||||||||||||||||||||||  ||||||||    
T  38040174 agttggcaaggacatgcattgttatatgcagggttcggggttc 38040132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 28537157 - 28537190
Alignment:
Q  189 ggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||||||||||||||||||| ||||||||||||    
T  28537157 ggacatgcattgttatatgcatgggccggggttc 28537190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 31556836 - 31556873
Alignment:
Q  185 gcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  31556836 gcagggacatgcattgttatatgcaggggtcggagttc 31556873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 31907664 - 31907697
Alignment:
Q  180 agttggcagggacatgcattgttatatgcagggg 213  Q
    |||| |||||||||||||||||||||||||||||    
T  31907664 agtttgcagggacatgcattgttatatgcagggg 31907697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 41405170 - 41405129
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggtt 221  Q
    ||||| |||||||||||||||||||||||| ||| |||||||    
T  41405170 agttgacagggacatgcattgttatatgcaagggtcggggtt 41405129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 9963423 - 9963471
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| ||||||||||||||||||||  |||||||    
T  9963423 agctcagttggcagggacaatgcattgttatatgcaggggttggggttc 9963471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 20735263 - 20735215
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||| ||||||| ||||||||||||||    
T  20735263 agctcagttggcagggacaatgcattattatatgtaggggccggggttc 20735215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 31292548 - 31292584
Alignment:
Q  186 cagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||||||||||||||||||||||||| || |||||||    
T  31292548 cagggacatgcattgttatatgcaggagctggggttc 31292584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 4528 - 4566
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcagggg 213  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  4528 agctcagttggcagggacatgcattgttatatgcagggg 4566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 4548 - 4586
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcagggg 213  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  4548 agctcagttggcagggacatgcattgttatatgcagggg 4586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 25043 - 25001
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  25043 agttggcagagacatgcaatgttatatgcaggggccggggttc 25001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 440407 - 440454
Alignment:
Q  175 agcttagttggcagggacatgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||| ||||||||| ||||||| ||||||||||||||    
T  440407 agctcagttggcaggaacatgcattattatatgtaggggccggggttc 440454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1343 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1343
Description:

Target: scaffold1343; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 959 - 922
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccgg 217  Q
    |||||||| | |||||||||||||||||||||||||||    
T  959 agttggcaagaacatgcattgttatatgcaggggccgg 922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 20736 - 20777
Alignment:
Q  180 agttggcagggacatgcattgttatatgcaggggccggggtt 221  Q
    ||||||||||||||| |||||||||||||| || ||||||||    
T  20736 agttggcagggacatacattgttatatgcatggaccggggtt 20777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 25033 - 25081
Alignment:
Q  175 agcttagttggcagggaca-tgcattgttatatgcaggggccggggttc 222  Q
    |||| |||||||||||||| |||||| |||||||||||||| |||||||    
T  25033 agctcagttggcagggacaatgcattattatatgcaggggctggggttc 25081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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