View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20634_low_5 (Length: 544)
Name: NF20634_low_5
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20634_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 6e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 286 - 527
Target Start/End: Original strand, 41082508 - 41082750
Alignment:
| Q |
286 |
taacaatacggtattcaaatttataaaattatattatatagnnnnnnnnaaagattattatggtggtttatcgtaatttcgataaatttaatgtgctact |
385 |
Q |
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| T |
41082508 |
taacaatacggtgttcaaatttatgaaattatattatgtagttttttctaaagattattatggtggtttatcgtaatttcgataaatttaatgtactact |
41082607 |
T |
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| Q |
386 |
aaataaggagttagtcattcgtcatttaaaacaatgtattattcaa-tttacaatattacaaataaaatatcaatttagtaactcaacatttaatagagt |
484 |
Q |
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| T |
41082608 |
aaataaggagttagcccttcgtcatttaaaaccatgtattattcaaatttacaatattacaaataaaataacaatttagtaactcaacatttaatagagt |
41082707 |
T |
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| Q |
485 |
taaaaagaagtgttaacaacactatattttcaatactcactta |
527 |
Q |
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| T |
41082708 |
taaaaagaagtgctaacaacactatattttcaatactcactta |
41082750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 41082033 - 41082222
Alignment:
| Q |
1 |
ttgtagatttgagtcacaaaatgtgctagggtttttgtttttgatgagggacccaatattacctacaataaacaaaacacaattgcaatttacaacaaaa |
100 |
Q |
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| T |
41082033 |
ttgtagatttgagacacaaagtgtgctagggtttttgtttttgatgagggacccaattttacctacaataaacaaaacacaattgcaatttacaacaaaa |
41082132 |
T |
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| Q |
101 |
ataatacactctatttgctaattctcaacttaagcaaaggtagtagggttgtcacatgtcacattcaactccactcattcaattcaatac |
190 |
Q |
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| T |
41082133 |
ataatacactctatttgctaattctcaacttaagcaaaggtagtagggttgtcacatgtcacattcaactccactcatttaattcaatac |
41082222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 234 - 275
Target Start/End: Original strand, 41082266 - 41082307
Alignment:
| Q |
234 |
gttggacaatacggcgttacctcgttagttgcgtcattgccc |
275 |
Q |
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| T |
41082266 |
gttggacaatacggtgttacctcgttagttgtgtcattgccc |
41082307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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