View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20634_low_53 (Length: 236)
Name: NF20634_low_53
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20634_low_53 |
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| [»] chr7 (10 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 29582798 - 29582561
Alignment:
| Q |
1 |
tcaaccttgaaattctctgcttcttggatcattctctcaatttcttcagttgacaatcttccatttacatttgttattgtaatctcttttttatttccag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29582798 |
tcaaccttgaaattctctgcttcttggatcattctctcaatttcttcagttgacaatcttccatttacatttgttattgtaatctcttttttatttccag |
29582699 |
T |
|
| Q |
101 |
tggttt--tcctcagcagtgacatttagtataccatctgcatctatagcaaagcatactttgatacgaaggccgcgaggagcacgaggaattaagagact |
198 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29582698 |
tggtttcttcctcagcagtgacatttagtataccatctgcatctatagcaaagcatactttgatacgaaggccgcgaggagcacgaggaattaagagact |
29582599 |
T |
|
| Q |
199 |
aaacaaacccagcaagttcttctcactggcttttattc |
236 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||| |
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| T |
29582598 |
aaacaaacccagcaagttgttctcactggcttttattc |
29582561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 29578629 - 29578392
Alignment:
| Q |
1 |
tcaaccttgaaattctctgcttcttggatcattctctcaatttcttcagttgacaatcttccatttacatttgttattgtaatctcttttttatttccag |
100 |
Q |
| |
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||||||||||| ||||| |||||||||||||||| ||||||||||| |||||| | ||||| ||| ||||||||||||| ||||| | |||||||||| |
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| T |
29578629 |
tcaaccttgaatttctcagcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccag |
29578530 |
T |
|
| Q |
101 |
tggttt--tcctcagcagtgacatttagtataccatctgcatctatagcaaagcatactttgatacgaaggccgcgaggagcacgaggaattaagagact |
198 |
Q |
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| |||| ||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| | |||||| || |||||| |||||| ||||||| |
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| T |
29578529 |
ttgtttcttcctcagcagtgacatttaatataccatctgcatcgatagcaaaacatactttgatgcaaaggccacggggagcaggaggaacaaagagacg |
29578430 |
T |
|
| Q |
199 |
aaacaaacccagcaagttcttctcactggcttttattc |
236 |
Q |
| |
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||||||||||| |||||| ||||||||||||||||||| |
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| T |
29578429 |
aaacaaacccaacaagttgttctcactggcttttattc |
29578392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 7 - 186
Target Start/End: Original strand, 8609137 - 8609318
Alignment:
| Q |
7 |
ttgaaattctctgcttcttggatcattctctcaatttcttcagttgacaatcttccatttacatttgttattgtaatctcttttttatttccagtggtt- |
105 |
Q |
| |
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||||||||||| |||||||| |||||||||||||||||||||||||| | || |||||| | |||||||| ||||| ||||| ||||| ||| ||||| |
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| T |
8609137 |
ttgaaattctcagcttcttgaatcattctctcaatttcttcagttgaaagtcgaccattttcctttgttatagtaatatctttcttattaccactggttt |
8609236 |
T |
|
| Q |
106 |
-ttcctcagcagtgacatttagtataccatctgcatctatagcaaagcatactttgatacgaaggccgcgaggagcacgagg |
186 |
Q |
| |
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|||||| |||| |||||||| ||||||||| |||||||||||||||||||||| |||| |||| || ||||| ||| |||| |
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| T |
8609237 |
cttcctctgcagagacatttaatataccatcagcatctatagcaaagcatacttggataggaagtccacgaggcgcaagagg |
8609318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 236
Target Start/End: Original strand, 8537256 - 8537487
Alignment:
| Q |
7 |
ttgaaattctctgcttcttggatcattctctcaatttcttcagttgacaatcttccatttacatttgttattgtaatctcttttttatttccagtggttt |
106 |
Q |
| |
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||||||||||| |||||||| || ||||||| |||||| |||||||| ||||||||| || |||| ||||| ||||| ||||| ||||| |||| ||||| |
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| T |
8537256 |
ttgaaattctcagcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttcttattcccagaggttt |
8537355 |
T |
|
| Q |
107 |
--tcctcagcagtgacatttagtataccatctgcatctatagcaaagcatactttgatacgaaggccgcgaggagcacgaggaattaagagactaaacaa |
204 |
Q |
| |
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|||||| || ||| || | || ||||| |||||||| | ||||||||||||| | ||||||| ||||| |||||||||| | ||||| |||| || |
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| T |
8537356 |
catcctcacaagagacgttcaaaattccatcagcatctattgtaaagcatactttgtgaggaaggcctcgaggtgcacgaggaactgagagattaaaaaa |
8537455 |
T |
|
| Q |
205 |
acccagcaagttcttctcactggcttttattc |
236 |
Q |
| |
|
||||| |||||| |||||||||||||| |||| |
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| T |
8537456 |
acccaacaagttgttctcactggctttcattc |
8537487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 8589856 - 8590076
Alignment:
| Q |
5 |
ccttgaaattctctgcttcttggatcattctctcaatttcttcagttgacaatcttccatttacatttgttattgtaatctcttttttatttccagtggt |
104 |
Q |
| |
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||||||| | ||| ||||| ||||||||||||||||||||||| ||| || |||||||||| |||| ||||||||||| | ||||||||| ||| || | |
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| T |
8589856 |
ccttgaagtgctcagcttcctggatcattctctcaatttcttcgcttgtcagtcttccattttcattggttattgtaatattttttttattaccactgct |
8589955 |
T |
|
| Q |
105 |
t--ttcctcagcagtgacatttagtataccatctgcatctatagcaaagcatactttgatacgaaggccgcgaggagcacgaggaattaagagactaaac |
202 |
Q |
| |
|
| ||||||||||| || |||| ||||||||| |||||||||| ||||||||| | |||| |||| || ||||| ||||| ||| | |||| ||||| |
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| T |
8589956 |
ttcttcctcagcagacacgtttaatataccatcagcatctatagaaaagcatacctggataggaagcccacgaggtgcacggcgaactttgagattaaac |
8590055 |
T |
|
| Q |
203 |
aaacccagcaagttcttctca |
223 |
Q |
| |
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||||| |||||||| |||||| |
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| T |
8590056 |
aaaccaagcaagttgttctca |
8590076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 8383829 - 8383746
Alignment:
| Q |
5 |
ccttgaaattctctgcttcttggatcattctctcaatttcttcagttgacaatcttccatttacatttgttattgtaatctctt |
88 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||||||| |||| |||||||||| |||| |
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| T |
8383829 |
ccttgaaattctctgcctcttggatcattctctcaatttcatcagttgataaacttccattttcattctttattgtaatatctt |
8383746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 8601191 - 8601272
Alignment:
| Q |
7 |
ttgaaattctctgcttcttggatcattctctcaatttcttcagttgacaatcttccatttacatttgttattgtaatctctt |
88 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||| | |||||| ||| |||| ||||||||||| |||| |
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| T |
8601191 |
ttgaaattctcagcttcttggatcattctctcaatttcttcggttgatagtcttcccttttcattcgttattgtaatttctt |
8601272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 8544851 - 8545073
Alignment:
| Q |
5 |
ccttgaaattctctgcttcttggatcattctctcaatttcttcagttgacaatcttccatttacatttgttattgtaatctcttttttatttccagtggt |
104 |
Q |
| |
|
|||||||||| || ||||| ||||||||||||||||||||||| |||| |||||||||||| || | ||||||||||| || || ||| | ||| |||| |
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| T |
8544851 |
ccttgaaattgtcagcttcctggatcattctctcaatttcttcccttgataatcttccattttcaatagttattgtaatttcattcttactaccactggt |
8544950 |
T |
|
| Q |
105 |
t--ttcctcagcagtgacatttagtataccatctgcatctatagcaaagcatactttgatacgaaggccgcgaggagcacgaggaattaagagactaaac |
202 |
Q |
| |
|
| ||| |||| ||| |||| || ||||| ||||||||||||||||||||| | | | |||||| || |||||| |||||| | |||| ||| |
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|
| T |
8544951 |
ttcttctgttgcagagacgtttaataaaccattagcatctatagcaaagcatactgtaaaaggaaggcgacggggagcaagaggaactttgagataaaat |
8545050 |
T |
|
| Q |
203 |
aaacccagcaagttcttctcact |
225 |
Q |
| |
|
||||| |||||||| |||||||| |
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| T |
8545051 |
aaaccaagcaagttgttctcact |
8545073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 160
Target Start/End: Original strand, 8569529 - 8569686
Alignment:
| Q |
5 |
ccttgaaattctctgcttcttggatcattctctcaatttcttcagttgacaatcttccatttacatttgttattgtaatctcttttttatttccagtggt |
104 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||| | | |||| |||||||| || |||| ||||||||||| || |||||||| ||| |||| |
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|
| T |
8569529 |
ccttgaaattctcagcttcctggatcattctctcaatttgtccccttgataatcttcccttctcattagttattgtaatttcatttttattgccactggt |
8569628 |
T |
|
| Q |
105 |
t--ttcctcagcagtgacatttagtataccatctgcatctatagcaaagcatactttg |
160 |
Q |
| |
|
| |||| | |||| ||| || | || ||||| |||||||| | ||||||||||||| |
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|
| T |
8569629 |
ttcttccactgcagagacgttcaaaattccatcagcatctattgtaaagcatactttg |
8569686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 233
Target Start/End: Original strand, 8601325 - 8601422
Alignment:
| Q |
139 |
atctatagcaaagcatactttgatacgaa---ggccgcgaggagcacgaggaattaagagactaaacaaacccagcaagttcttctcactggctttta |
233 |
Q |
| |
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|||||| | |||||||||||||||| ||| |||| ||||||||| |||||||| ||| |||||| ||||| |||||| |||||||| ||||||| |
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| T |
8601325 |
atctatggaaaagcatactttgataggaatttggccccgaggagcaggaggaattgagaatctaaacttacccaacaagttgttctcacttgctttta |
8601422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 12527722 - 12527935
Alignment:
| Q |
5 |
ccttgaaattctctgcttcttggatcattctctcaatttcttcagttgacaatcttccatttacatttgttattgtaatctcttttttatttccagtgg- |
103 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| ||||||||||| |||| |||||||||||| |||||||||||||||| ||||| ||||| ||| ||| |
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|
| T |
12527722 |
ccttgaaattctcagcttcctggatcattctcccaatttcttcacttgataatcttccattttcatttgttattgtaatatctttcttattaccactggt |
12527821 |
T |
|
| Q |
104 |
-ttttcctcagcagtgacatttagtataccatctgcatctatagcaaagcatactttgatacgaaggccgcgaggagcacgaggaattaagagactaaac |
202 |
Q |
| |
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||||||| |||| ||| |||| |||||| || |||||||||||||||||||||| || | ||||| ||||| ||| |||||| | | |||| ||| |
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| T |
12527822 |
tttttccttcgcagagacttttaatataccgtcagcatctatagcaaagcatacttggacaggaaggtaacgaggtgcatgaggaactgaaagacgaaag |
12527921 |
T |
|
| Q |
203 |
aaacccagcaagtt |
216 |
Q |
| |
|
||||| |||||||| |
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|
| T |
12527922 |
aaaccaagcaagtt |
12527935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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