View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20634_low_59 (Length: 209)
Name: NF20634_low_59
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20634_low_59 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 9 - 194
Target Start/End: Original strand, 46096233 - 46096424
Alignment:
| Q |
9 |
tgtcgaagaaaatattataatggtggccagccttcttcaataacta----ttcaatttcccgagtaaagac--tgtacagtggacacaagtcatttgtag |
102 |
Q |
| |
|
|||| |||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
46096233 |
tgtcaaagaaaatgttaaaatggtggccagccttcttcaataactagttattcaatttcccgagtaaagacagtgtatagtggacacaagtcatttgtag |
46096332 |
T |
|
| Q |
103 |
ttacttccacatttgacttttacaatttgcatcaagtttcccgttcttgtttcatctaaaaaggtagtggggtctctctaagtcgagggtat |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46096333 |
ttacttccacatttgacttttacaatttgcatcaagtttcccgttcttgtttcatctaaaaaggtagtggggtctctctaagtcgagggtat |
46096424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University