View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20634_low_7 (Length: 514)
Name: NF20634_low_7
Description: NF20634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20634_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 42608546 - 42608909
Alignment:
| Q |
1 |
tcattgccatgattcagagagtgtcattcctaatttcctagtcaaaattaaactactcatactagtatatattactagaaaaaagggttatcgttcacgt |
100 |
Q |
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| T |
42608546 |
tcattgccatgattcagagagtgtcattcctaatttcctagtcaaaattaaactactcatactagtatatattactagaaaaaagagttatcgttcacgt |
42608645 |
T |
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| Q |
101 |
gaacttaactcaattagtaataacattgcattatatatacagatgccga-ggtttaaacttgtacacctcactaagagatgaatttctaaccacattttt |
199 |
Q |
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| T |
42608646 |
gaacttaactcaattagtaataacattacattatatatacagatgccaaaggtttaaacttatacacctcattaagagatgaatttctaaccacattttt |
42608745 |
T |
|
| Q |
200 |
tccaaacaccccttccttttgtttaccttcttttttagggtgggtggtctaatacattatggttgtgaagaactcagaggttgcacacaaagaacatatt |
299 |
Q |
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| T |
42608746 |
tccaaacaccccttccttttgtttaccttcttttttagggtgggtggtctaatacattatggttgtgaagaactcggaggttgcacacaaagaacgtatt |
42608845 |
T |
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| Q |
300 |
aatataatataacatcaaatcatacagattgttatcgtagtttaaaatacatgcccaacatcat |
363 |
Q |
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| T |
42608846 |
catataatataacatcaaatcatacagattgttatcgtagtttaaaatacatgcccaacatcat |
42608909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 434 - 496
Target Start/End: Original strand, 42608975 - 42609037
Alignment:
| Q |
434 |
ttacattagagtagcacaatcctagcagataggtagaggaacaccattccactcctttagaca |
496 |
Q |
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| T |
42608975 |
ttacattagagtagcacaatcctagcagataggtagaggaacaccattccactcctttagaca |
42609037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 43400984 - 43400944
Alignment:
| Q |
98 |
cgtgaacttaactcaattagtaataacattgcattatatat |
138 |
Q |
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| T |
43400984 |
cgtgaacttaactcaattagtaagagcattgcattatatat |
43400944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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