View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20635_high_1 (Length: 715)
Name: NF20635_high_1
Description: NF20635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20635_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 586; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 17 - 680
Target Start/End: Original strand, 38406941 - 38407604
Alignment:
| Q |
17 |
gaagagaaaaggtaggccgtataaatgaaatttattaagaatctactaaacggta--ttcatgcattggttttgctgttataatagcctactgtgttgct |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| |||| |
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| T |
38406941 |
gaagagaaaaggtaggccgtataaatgaaatttattaagaatctactaaacggtacattcatgcattggttttgctgttatcatagcttactgtgctgct |
38407040 |
T |
|
| Q |
115 |
tgtagaaactttattgcagannnnnnnnacaggagatttcgttgcagctgtattgcacggtttgtgatagtttttgtggctagagagtatatatagtttg |
214 |
Q |
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| T |
38407041 |
tgtagaaactttattgcagatttttat-acaggagatttcgttgcaactgtattgcacggtttgtgatagtttttgtggctagagagtatatatagtttg |
38407139 |
T |
|
| Q |
215 |
tgctgtgtaggcttggtaacacagaattttgccattttgcattgttcgagtgcagtttgcgttatcatcctatgcttgaaattgttgttctgcattttga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38407140 |
tgctgtgtaggcttggtaacacagaattttgccattttgcattgttcgagtgcagtttgcgttatcatcctatgcttgaaattgttgttctgcattttga |
38407239 |
T |
|
| Q |
315 |
gctccaattggcctcattgaagtctcaagggtgacttaggcaacaagaggtctggttgataacaagatcaaataataaactataccaatggaatcaacaa |
414 |
Q |
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| T |
38407240 |
gctccaattggcctcattgaagtctcaagggtgacttaggcaacaagaggtctggttgataacaagatcaaataataaactataccaatgg-atcaacaa |
38407338 |
T |
|
| Q |
415 |
tgttgaggaaaagctggaaatatgaggtttgtgtgattcgcatatttttgaaaatattagcttgaaatatgaaagaaaaatgatataatgctatgaaata |
514 |
Q |
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| T |
38407339 |
tgttgaggaaaagcttgaaatatgaggtttgtgtgattcgcatatttttgaaaatattagcttgaaatatgaaagaaaaatgatataatgctatgaaata |
38407438 |
T |
|
| Q |
515 |
cagtccttaagactagtaagttttgagagcattgggccatgcctaatgatgcaagagacttacagaatctgctaatagtttctttagaaagacactcaag |
614 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38407439 |
cagtccttaagactagtaagttttgagatcattgggctatgcctaatgatgcaagagacttacagaatctgctaatagtttctttagaaagacactcaag |
38407538 |
T |
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| Q |
615 |
caagcaaaccaaatgtgattcacaaattagcattaatctttctgtggatattgccattaaaaaaaa |
680 |
Q |
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| T |
38407539 |
caagcaaacccaatgtgattcacaaattagcattaatctttctgtggatattgccattaaaaaaaa |
38407604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 617 - 678
Target Start/End: Original strand, 38412255 - 38412316
Alignment:
| Q |
617 |
agcaaaccaaatgtgattcacaaattagcattaatctttctgtggatattgccattaaaaaa |
678 |
Q |
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| T |
38412255 |
agcaaactaaatgtgattcacaaatcagcattaatctttcggtggatatcgccattaaaaaa |
38412316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 483 - 542
Target Start/End: Original strand, 45057755 - 45057814
Alignment:
| Q |
483 |
atgaaagaaaaatgatataatgctatgaaatacagtccttaagactagtaagttttgaga |
542 |
Q |
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| T |
45057755 |
atgaaagaaaaaggatataatgctatgaaatacagtccttaagactagtaagttttgaga |
45057814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 565 - 611
Target Start/End: Original strand, 45058430 - 45058476
Alignment:
| Q |
565 |
gcaagagacttacagaatctgctaatagtttctttagaaagacactc |
611 |
Q |
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| T |
45058430 |
gcaagagacttaaagaatctgctaatagtttctttagaaagacactc |
45058476 |
T |
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