View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20635_high_2 (Length: 714)

Name: NF20635_high_2
Description: NF20635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20635_high_2
NF20635_high_2
[»] chr1 (1 HSPs)
chr1 (20-714)||(10488164-10488860)


Alignment Details
Target: chr1 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 20 - 714
Target Start/End: Complemental strand, 10488860 - 10488164
Alignment:
Q  20 atcttatttgaatctttgtcccatctttcccacaagaaaatcatattttcatgtgctatcttttatattaactaaccacaaagcaaccattctttttctt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10488860 atcttatttgaatctttgtcccatctttcccacaagaaaatcatattttcatgtgctatcttttatattaactaaccacaaagcaaccattctttttctt 10488761  T
Q  120 ttcacctatttgcaactttttcaaatcatttttactcagttatcacaaagtccccatttttcacttaaactaagtttcttcacaacttcttcaccccgca 219  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10488760 ttcacctttttgcaactttttcaaatcatttttactcagttatcacaaagtccccatttttcacttaaactaagtttcttcacaacttcttcaccccgca 10488661  T
Q  220 aagctccaccagaccaacaccatacttatttctcgtcttttccatatattctttaaagtttt-ctttcaattgtcaattgtttatcaatttccctcgaca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  10488660 aagctccaccagaccaacaccatacttatttctcgtcttttccatatattctttaaagttttattttcaattgtcaattgtttatcaatttccctcgaca 10488561  T
Q  319 acttcaaccttttttacttcgcaggaatttagtttctctatgttgctttgtttcccatttgatttactattcnnnnnnngagttcaagatgagttcgcca 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||    
T  10488560 acttcaaccttttttacttcgcaggaatttagtttctctatgttgctttgtttcccatttgatttactattcttttttttagttcaagatgagttcgcca 10488461  T
Q  419 ccagaaaggcggaggaaacgtagaaagcttcctaaatc--tgaggaaaaggattgaaaaatatactttctacttttaggagtcaacatctgagtcgttgt 516  Q
    ||||||||||||||||||||||||||||||| ||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  10488460 ccagaaaggcggaggaaacgtagaaagcttcataactctgtgaggaaaaggattgaaaaatatactttctacttttaggagtcaacatctgagtcattgc 10488361  T
Q  517 gggagaggttcaacgaatttggaacattgattgatgtgttcatacgaaggaaaagagataagtnnnnnnnaatatgttcgactttgttcggttcaaatcc 616  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       |||||||| |||||||||||||||||||||    
T  10488360 gggagaggttcaacgaatttggaacattcattgatgtgttcatacgaaggaaaagagataagt-ggggggaatatgtttgactttgttcggttcaaatcc 10488262  T
Q  617 gtccaagatgaggaggacctatatgagaaattagatcaaattcacattggatattgcgagcttaacataaatttaccaagattcaactttgatgaaga 714  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10488261 gtccaagatgaggaggacctatatgagaaattagatcaaattcacattggatattgcgagcttaacgtaaatttaccaagattcaactttgatgaaga 10488164  T

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