View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20635_high_3 (Length: 612)
Name: NF20635_high_3
Description: NF20635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20635_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 24 - 596
Target Start/End: Complemental strand, 9516557 - 9515981
Alignment:
| Q |
24 |
ggtgatattaacgaacaaacgtagatcacgtttgccgttgtattctatttcagcggacatggttgtgatatgatgaagataactgctgagtattcttctt |
123 |
Q |
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| T |
9516557 |
ggtgatattaacgaacaaacgtaaatcacgttttccgttgtattctatttcagcggacatggtggtaatatgatgaagataactacttaatattcttcgt |
9516458 |
T |
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| Q |
124 |
ttatcggtttttctgattttgagaacaaatgcaccggtttgatttggttcggnnnnnnnatagaaccaataaacagtggcaccgaggaacctgtcttcga |
223 |
Q |
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| T |
9516457 |
ttatcggtttttctgatcttgatcacaaatgcaccggtttgatttggttcggtttttgtatagaaccaataaaccgtagcaccgagaaacctgtcttcga |
9516358 |
T |
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| Q |
224 |
tgatttgatcggaatctagagttaaaacgatgtcgttttgattatttccggtaatgagattggtgaagtcggaatcttcaagagaaggaagagaatgtaa |
323 |
Q |
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| T |
9516357 |
tgatttgatctgagtctagggttaaaacgatgtcgttttgattatttccggtaatgagattggtgaagtcggaatcttcaagagaaggaagagaatgtaa |
9516258 |
T |
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| Q |
324 |
ataaagcgaaactttacgatagaacatgttcggttgcatggtttggtttagttcggggactttgaggtattggtaaagatnnnnnnnntcttgtagtttt |
423 |
Q |
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| T |
9516257 |
ataaagcgaaactttacgatagaacatgttcggttgcatggtttggtttagttcggggactttgaggtattggtaaagataaaaaaaatcttgtagtttt |
9516158 |
T |
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| Q |
424 |
gtgtggagnnnnnnngttgtgtgtattaaaccagttttgaataatatgtatcgaattatgaaaagaatgatgggtgtgaggagaataaggattatgaatt |
523 |
Q |
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| T |
9516157 |
ttgtggagtttttttgttgtgtgtattaaaccagttttgaataatatgtatcgaattatgaaaagaatgatgggtgtgaggggaataaggattatgaatt |
9516058 |
T |
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| Q |
524 |
tgtaagataacatggtag----nnnnnnnncacaaacacaatttgttgtttcaactaggtgttgttagtgttgtttt |
596 |
Q |
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| T |
9516057 |
tgtaagataacatggtagaaaaaaaaaaaacacaaacacaatttgttgtttcaactaggtgttgttagtgttgtttt |
9515981 |
T |
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