View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20635_low_12 (Length: 208)
Name: NF20635_low_12
Description: NF20635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20635_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 34902580 - 34902756
Alignment:
| Q |
15 |
atgaagagaactaatgcaagaagggaagccatgaggagaatgttgtgcctagccattgttatgtgaaatttgagagtttttgctattgcttctttttgat |
114 |
Q |
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| T |
34902580 |
atgaagagaactaatgcaagaagggaagccatgaggagaatgttgtgcctggccattgttatgtgaaatttgagagtttttgctattgcttctttttgat |
34902679 |
T |
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| Q |
115 |
tttatgagtaataaagagggaaagagagtggtatttatagaggatttggggagatgcatgttaggtacgtacgtggt |
191 |
Q |
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| T |
34902680 |
tttatgagtaataaagagggaaagagggtggtatttatagaggatttggggtgatgcttgttaggtacgtacgtggt |
34902756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 34895064 - 34895239
Alignment:
| Q |
15 |
atgaagagaactaatgcaagaagggaagccatgaggagaatgttgtgcctagccattgttatgtgaaatttgagagtttttgctattgcttctttttgat |
114 |
Q |
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| T |
34895064 |
atgaagataactaatgcaagaagggaagccatgaggagaatgttgtgcctggccattgttctgtgaaatttgagagtttttgctattgcttctttttgat |
34895163 |
T |
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| Q |
115 |
tttatgagtaataaagagggaaagagagtggtatttatagaggatttggggagatgcatgttaggtacgtacgtgg |
190 |
Q |
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| T |
34895164 |
tttatgagtaataaagagggaaagagggtggtatttatagaggatttggggagattcatgttaggtacgtacgtgg |
34895239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 34908797 - 34908968
Alignment:
| Q |
15 |
atgaagagaactaatgcaagaagggaagccatgaggagaatgttgtgcctagccat--tgttatgtgaaatttgagagtttttgctat-tgcttcttttt |
111 |
Q |
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| T |
34908797 |
atgaagagaacaaatgcaagaagggtagctatgaggatgatattgtgcctggccatgttgttttgtggaatgtgagattgtgttctaagttctt-tttgt |
34908895 |
T |
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| Q |
112 |
gattttatgagtaataaagagggaaagagagtggtatttatagaggatttggggagatgcatgttaggtacgt |
184 |
Q |
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| T |
34908896 |
gatttgatgagtaaaatagagggatagagggtggtatttattgaggatttgaggtgttgcatgttaggtacgt |
34908968 |
T |
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