View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20635_low_4 (Length: 536)
Name: NF20635_low_4
Description: NF20635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20635_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 145 - 523
Target Start/End: Complemental strand, 1423278 - 1422900
Alignment:
| Q |
145 |
atggagtttcttcacttcttctttcttgcaagcannnnnnnnatgacaggtaatgagtgttctaattcttagagtgaaaccagaagttattggtgaagta |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1423278 |
atggagtttcttcacttcttctttcttgcaagcattttttttatgacaggtaatgagtgttctgattcttagagtgaaaccagaagttattggtgaagta |
1423179 |
T |
|
| Q |
245 |
gctcaaaatgataaatattttagatacactttctctttggctattgtgagcatcctctaatctctaaagttaatttaaaaaggatataaacaatgactat |
344 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1423178 |
gctcaaaatgataatcattttagatacactttctctttggctattgtgagcatcctctaatctctaaagttaatttaaaaaggatataaacaatgactat |
1423079 |
T |
|
| Q |
345 |
atcaaatcttgttttgatttgttcatcacaagattaatttaaaaatatatttaacacaagtagtgactacgtcaaatctacttataattatgtcattata |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1423078 |
atcaaatcttgttttgatttgttcatcacaagattaatttaaaaatatatttaacacaagtagtgactacgtcaaatctacttataattatgtcattata |
1422979 |
T |
|
| Q |
445 |
caaatttcatactttatgataaatcctcttttagttttgtaattacaaatattttcaacttaagaattacgtacctttg |
523 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1422978 |
caaatttcatactttatgataaatcctattttagttttgtaattacaaatattttcaacttaagaattacgtacctttg |
1422900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 30 - 167
Target Start/End: Complemental strand, 1416595 - 1416458
Alignment:
| Q |
30 |
agatacaatatatatgatatacatgagtttcacatagactagcatagtactataaatacacattctcagtctatttttacattcattcaatacaccttaa |
129 |
Q |
| |
|
|||||||||| ||||||||| |||||| ||||||||||||||| |||||||||||||||||||| || || ||| ||||||||||||||||||||| ||| |
|
|
| T |
1416595 |
agatacaatacatatgatatgcatgaggttcacatagactagcgtagtactataaatacacattttctgtgtatgtttacattcattcaatacaccataa |
1416496 |
T |
|
| Q |
130 |
cctttcacttctttcatggagtttcttcacttcttctt |
167 |
Q |
| |
|
||||| ||||||||| |||||||||||||||| ||||| |
|
|
| T |
1416495 |
ccttttacttctttcgtggagtttcttcactttttctt |
1416458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 1423373 - 1423285
Alignment:
| Q |
16 |
caattaaaaggctaagatacaatatatatgatatacatgagtttcacatagactagcatagtactataaatacacattctcagtctatt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1423373 |
caattaaaaggctaagatacaatatatatgatatgcatgagtttcacatagactagcatagtactataaatacacattctcagtgtatt |
1423285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University