View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20635_low_5 (Length: 504)

Name: NF20635_low_5
Description: NF20635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20635_low_5
NF20635_low_5
[»] chr8 (33 HSPs)
chr8 (43-488)||(4898145-4898591)
chr8 (126-488)||(10449463-10449832)
chr8 (126-488)||(4801858-4802208)
chr8 (88-307)||(21437105-21437325)
chr8 (364-488)||(21437324-21437448)
chr8 (126-350)||(4871419-4871650)
chr8 (325-488)||(4910749-4910912)
chr8 (130-268)||(4910519-4910659)
chr8 (126-292)||(4683611-4683775)
chr8 (126-292)||(4691631-4691795)
chr8 (126-331)||(4847163-4847370)
chr8 (368-488)||(4871773-4871893)
chr8 (133-262)||(4920477-4920608)
chr8 (368-488)||(4847367-4847487)
chr8 (121-488)||(4887558-4887920)
chr8 (140-292)||(4752437-4752587)
chr8 (126-290)||(4792003-4792165)
chr8 (140-262)||(4728591-4728715)
chr8 (126-295)||(4773730-4773897)
chr8 (140-262)||(4705852-4705976)
chr8 (126-289)||(4827055-4827216)
chr8 (370-488)||(4717804-4717922)
chr8 (139-262)||(4718272-4718397)
chr8 (140-249)||(4739340-4739451)
chr8 (374-488)||(4691460-4691574)
chr8 (371-488)||(4920865-4920982)
chr8 (369-488)||(4728383-4728502)
chr8 (369-488)||(4773965-4774084)
chr8 (389-477)||(4705653-4705741)
chr8 (373-488)||(4739108-4739223)
chr8 (369-428)||(4752316-4752375)
chr8 (387-463)||(4792223-4792299)
chr8 (286-334)||(4910662-4910710)


Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 43 - 488
Target Start/End: Original strand, 4898145 - 4898591
Alignment:
Q  43 tttaaaggaggacccaattccgtgaactgagaaaaataacaagatcaaagccgcaactaagccagctaaagacaatacataagtacctaataagtgttgt 142  Q
    |||||||| ||||| |||||||||||| ||||||||||| |||| |||||| |||| ||||| ||  ||||||| ||||||| |||||| |||||||| |    
T  4898145 tttaaagggggacc-aattccgtgaacggagaaaaataagaagaccaaagctgcaattaagcaagagaaagacagtacataattacctattaagtgttat 4898243  T
Q  143 tggagatttcctttggccatgtattcacaa--caatgctttgcgttcatcttcatcaccatatccaatgagagagaccaaatttctatgatgaacaatca 240  Q
    ||||||||||||||||||||||||||| ||  ||||||||||| ||   ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4898244 tggagatttcctttggccatgtattcataaaccaatgctttgcttttgccttcatcacaatatccaatgagagagaccaaatttctatgatgaacaatca 4898343  T
Q  241 ttagaagttccgcctgcattttgagttaatattatctctaccaaagttaactatggaaaatattgtagcatttttaacgtaaatactattacttgaataa 340  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||    
T  4898344 ttagaagttccgcctgcattttgagttaatattatatctaccaaagttaactatggaaactattgtagcattcttaacttaaatactattacttgaataa 4898443  T
Q  341 aatcatgattgaatatattgtgttatgattaacttgaatccaatgactaacctcagattgaaattccttatatccttgctttgatgattttgaaagtatt 440  Q
    |||||| ||||||||| ||||| | ||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||| |||    
T  4898444 aatcataattgaatatgttgtggtttgattaacttgaatccaataactaacctcagattgaaattacttataaccttgctttgatgattttgaaagcatt 4898543  T
Q  441 tttacagccacttgagtgtgatcatgtaaaaagccaatgtaaactttt 488  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4898544 tttacagccacttgagtgtgatcttgtaaaaagccaatgtaaactttt 4898591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 126 - 488
Target Start/End: Complemental strand, 10449832 - 10449463
Alignment:
Q  126 tacctaataagtgttgttggagatttcctttggccatgtattcacaa--caatgctttgcgttcatcttcatcaccatatccaatgagagagaccaaatt 223  Q
    |||| |||||||||||| |||||||||| || |||||||||||| |   |||||||||   |||| ||||||||| |||||||| ||||||||||||| |    
T  10449832 taccaaataagtgttgtaggagatttccattagccatgtattcatagatcaatgctttaacttcaccttcatcacaatatccaacgagagagaccaaact 10449733  T
Q  224 tctatgatgaacaatcattagaagttccgcctgcattttg--agttaatattatctctaccaaagttaactatggaaaatattgtagcatttttaacgta 321  Q
    |||||||||||||||| |||||||||  |||||||||||   ||||||| |||| ||||||||||||||||  ||||||||||| || | | |||| ||     
T  10449732 tctatgatgaacaatcgttagaagttgtgcctgcattttataagttaatgttatgtctaccaaagttaactgcggaaaatattgcaggagtcttaatgtg 10449633  T
Q  322 aatactattact---tgaataaaatcatgattgaatatattgtgttatgattaacttgaatccaatgactaacctcagattgaaattccttatatccttg 418  Q
    ||||||||||||   ||| ||||||||||| |||||  |||||| | || |||||||||||| ||  ||||||||||||||||||||||||||| |||||    
T  10449632 aatactattactacttgactaaaatcatgaatgaatccattgtgctttggttaacttgaatctaaaaactaacctcagattgaaattccttataaccttg 10449533  T
Q  419 ctttgatgattttgaaagtatttttacagccacttgagtgtgatcatgtaaaaagccaatgtaaactttt 488  Q
    |||||||||||||||||| | ||||||||| ||||| || ||||| ||||||| ||||||||||||||||    
T  10449532 ctttgatgattttgaaagaaattttacagctacttgggtctgatcttgtaaaatgccaatgtaaactttt 10449463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 126 - 488
Target Start/End: Original strand, 4801858 - 4802208
Alignment:
Q  126 tacctaataagtgttgttggagatttcctttggccatgtattcacaa--caatgctttgcgttcatcttcatcaccatatccaatgagagagaccaaatt 223  Q
    |||||||||| | ||||||||||||||| || |||||||| ||| ||  || |||||||  |||| ||||||||| |||||||||||||||||||| |||    
T  4801858 tacctaataaatattgttggagatttccattcgccatgtactcataaatcagtgctttgatttcaccttcatcacaatatccaatgagagagaccagatt 4801957  T
Q  224 tctatgatgaacaatcattagaagttccgcctgcattttgagttaatattatctctaccaaagttaactatggaaaatattgtagcatttttaacgtaaa 323  Q
     |||||||||||||||||||  |||| | |||||||||||||||||| ||     ||| || ||| |||| | ||||||  |||| ||| |||| |||||    
T  4801958 cctatgatgaacaatcattaatagttgcacctgcattttgagttaatgtt-----tacgaatgtttactaagaaaaataccgtaggattcttaatgtaaa 4802052  T
Q  324 tactattacttgaataaaatcatgattgaatatattgtgttatgattaacttgaatccaatgactaacctcagattgaaattccttatatccttgctttg 423  Q
    ||||||||||||| |||||||||||||          |||| | ||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |    
T  4802053 tactattacttgactaaaatcatgattt---------tgttcttattaacttgaatccattgactaacctctgattgaaattccttatacccttgcttcg 4802143  T
Q  424 atgattttgaaagtatttttacagccacttgagtgtgatcatgtaaaaagccaatgtaaactttt 488  Q
    ||||  ||||||| ||||||||||| | ||||||| |||| ||||||| ||| ||||||||||||    
T  4802144 atgaagttgaaagcatttttacagctaattgagtgcgatcttgtaaaatgccgatgtaaactttt 4802208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 88 - 307
Target Start/End: Original strand, 21437105 - 21437325
Alignment:
Q  88 caaagccgcaactaagccagctaaagacaatacataagtacctaataagtgttgttggagatttcctttggccatgtattcacaa--caatgctttgcgt 185  Q
    |||||| |||| ||||||||||||||||||   |||| ||||||| ||||||||||| | |||||| ||| ||||||||||| ||  |||||| ||   |    
T  21437105 caaagctgcaattaagccagctaaagacaaacgataattacctaacaagtgttgttgaacatttccgttgcccatgtattcataaatcaatgcctttttt 21437204  T
Q  186 tcatcttcatcaccatatccaatgagagagaccaaatttctatgatgaacaatcattagaagttccgcctgcattttgagttaatattatctctaccaaa 285  Q
    ||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||| ||||    
T  21437205 tcaccttcatcacaatacccaatgagagagaccaaatttctatgatgaacaatcattagaagttgcgcctgcattttgag-taatatcatctctagcaaa 21437303  T
Q  286 gttaactatggaaaatattgta 307  Q
    ||||| ||||||||||||||||    
T  21437304 gttaaatatggaaaatattgta 21437325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 364 - 488
Target Start/End: Original strand, 21437324 - 21437448
Alignment:
Q  364 tatgattaacttgaatccaatgactaacctcagattgaaattccttatatccttgctttgatgattttgaaagtatttttacagccacttgagtgtgatc 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||||||| ||||    
T  21437324 tatgattaacttgaatccaatgactaacctcagattgaaattccttataaccttgctttgatgattttgaaagcatttttaccgctacttgagtgcgatc 21437423  T
Q  464 atgtaaaaagccaatgtaaactttt 488  Q
    |||||||| ||||||||||||||||    
T  21437424 atgtaaaatgccaatgtaaactttt 21437448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 126 - 350
Target Start/End: Original strand, 4871419 - 4871650
Alignment:
Q  126 tacctaataagtgttgttggagatttcctttggccatgtattcacaa--caatgctttgcgttcatcttcatcaccatatccaatgagagagaccaaatt 223  Q
    |||| |||||||||||||||||| |||| || | |||||||||| ||  ||||||||||  |||||||||||| | ||||||||||||||||||||||||    
T  4871419 taccaaataagtgttgttggagacttccatttgtcatgtattcataaatcaatgctttgttttcatcttcatcgcaatatccaatgagagagaccaaatt 4871518  T
Q  224 tctatgatgaacaatcattagaagttccgcctgca-ttttgagttaatattatctctaccaaagttaactatggaaaatattgta----gcatttttaac 318  Q
    ||||||||||||||||||||||||||  ||||||| |||| |||  || ||||||||||||||||| |||||| ||||||||| |      ||| ||||     
T  4871519 tctatgatgaacaatcattagaagttgtgcctgcattttttagtctatgttatctctaccaaagtttactatgaaaaatattgcatgatatattcttaat 4871618  T
Q  319 gtaaatactattacttgaataaaatcatgatt 350  Q
     ||||||||||||||||| |||||||||||||    
T  4871619 ataaatactattacttgactaaaatcatgatt 4871650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 325 - 488
Target Start/End: Original strand, 4910749 - 4910912
Alignment:
Q  325 actattacttgaataaaatcatgattgaatatattgtgttatgattaacttgaatccaatgactaacctcagattgaaattccttatatccttgctttga 424  Q
    |||||||||||| |||||||||||||||||| |||||||| | | |||||||||||||| ||| |||||| |||||||||||||| || ||||| |||||    
T  4910749 actattacttgagtaaaatcatgattgaatacattgtgttctaaataacttgaatccaaggacaaacctctgattgaaattccttgtaaccttggtttga 4910848  T
Q  425 tgattttgaaagtatttttacagccacttgagtgtgatcatgtaaaaagccaatgtaaactttt 488  Q
    |||| ||||||| ||||||||||| |||||||||||||| |||||||  |||| ||||||||||    
T  4910849 tgatgttgaaagaatttttacagctacttgagtgtgatcttgtaaaattccaacgtaaactttt 4910912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 4910519 - 4910659
Alignment:
Q  130 taataagtgttgttggagatttcctttggccatgtattcacaa--caatgctttgcgttcatcttcatcaccatatccaatgagagagaccaaatttcta 227  Q
    ||||||||||||||| | |||||| ||||||||||||||| ||  ||||||||||  |||||||||||||| ||| || |||||||||||||||||||||    
T  4910519 taataagtgttgttgaacatttccattggccatgtattcataaatcaatgctttgatttcatcttcatcacaataaccgatgagagagaccaaatttcta 4910618  T
Q  228 tgatgaacaatcattagaagttccgcctgcattttgagtta 268  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  4910619 tgatgaacaaccattagaagttgcgcctgcattttgagtta 4910659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 126 - 292
Target Start/End: Complemental strand, 4683775 - 4683611
Alignment:
Q  126 tacctaataagtgttgttggagatttcctttggccatgtattcacaa--caatgctttgcgttcatcttcatcaccatatccaatgagagagaccaaatt 223  Q
    ||||||| || ||||||||||||||||||||||||||||||||| ||  ||||||||||  ||||  ||||||||  ||||||| |||||||||||||||    
T  4683775 tacctaacaaatgttgttggagatttcctttggccatgtattcataaatcaatgctttgatttcagtttcatcacagtatccaaggagagagaccaaatt 4683676  T
Q  224 tctatgatgaacaatcattagaagttccgcctgcattttgagttaatattatctctaccaaagttaact 292  Q
    ||||||||||||||||||||||||||  ||||||||||| | ||    |||||||||||||||||||||    
T  4683675 tctatgatgaacaatcattagaagttgtgcctgcattttaaatt----ttatctctaccaaagttaact 4683611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 126 - 292
Target Start/End: Complemental strand, 4691795 - 4691631
Alignment:
Q  126 tacctaataagtgttgttggagatttcctttggccatgtattcacaa--caatgctttgcgttcatcttcatcaccatatccaatgagagagaccaaatt 223  Q
    |||| ||||||||||||||||||||||| |||||||| |||||| ||  ||||||||||  |||| ||||||||| ||||||||||||||| ||||||||    
T  4691795 taccaaataagtgttgttggagatttccattggccatatattcataaatcaatgctttgatttcaccttcatcacaatatccaatgagagataccaaatt 4691696  T
Q  224 tctatgatgaacaatcattagaagttccgcctgcattttgagttaatattatctctaccaaagttaact 292  Q
    ||||||||||||||||||||||||||  |||||||| |    | ||| |||||||||||||||||||||    
T  4691695 tctatgatgaacaatcattagaagttgtgcctgcatgt----tcaattttatctctaccaaagttaact 4691631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 126 - 331
Target Start/End: Original strand, 4847163 - 4847370
Alignment:
Q  126 tacctaataagtgttgttggagatttcctttggccatgtattcacaa--caatgctttgcgttcatcttcatcaccatatccaatgagagagaccaaatt 223  Q
    |||||||||| | ||||||||||||||| || | |||||| ||| ||  || |||||||  |||| ||||||||| ||||||||||||||||||||||||    
T  4847163 tacctaataaatattgttggagatttccattcgtcatgtactcataaatcagtgctttgatttcaccttcatcacaatatccaatgagagagaccaaatt 4847262  T
Q  224 tctatgatgaacaatcattagaagttccgcctgcattttgagttaatattatctctaccaaagttaactatggaaaatattgtagcatttttaacgtaaa 323  Q
     ||||||||||||||||||| ||||| | |||||||||||||||||| |||||||||| || ||| |||| | ||||||| |||| ||| ||||  | ||    
T  4847263 cctatgatgaacaatcattaaaagttgcacctgcattttgagttaatgttatctctacgaatgtttactaagaaaaatatcgtaggattcttaatatgaa 4847362  T
Q  324 tactatta 331  Q
    ||||||||    
T  4847363 tactatta 4847370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 368 - 488
Target Start/End: Original strand, 4871773 - 4871893
Alignment:
Q  368 attaacttgaatccaatgactaacctcagattgaaattccttatatccttgctttgatgattttgaaagtatttttacagccacttgagtgtgatcatgt 467  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| ||||| ||||||||| |||| |||    
T  4871773 attaacttgaatccattgactaacctcagattgaaattccttataaccttgctttgatgatgttgaaagaattttaacagcaacttgagtgagatcttgt 4871872  T
Q  468 aaaaagccaatgtaaactttt 488  Q
    |||| ||||||||||||||||    
T  4871873 aaaatgccaatgtaaactttt 4871893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 133 - 262
Target Start/End: Original strand, 4920477 - 4920608
Alignment:
Q  133 taagtgttgttggagatttcctttggccatgtattcacaa--caatgctttgcgttcatcttcatcaccatatccaatgagagagaccaaatttctatga 230  Q
    ||||||||||||||||||||| ||||||||||||||| ||  ||||||||||  |||| ||||||||| |||||| ||||||||||||||||||||||||    
T  4920477 taagtgttgttggagatttccattggccatgtattcataaaccaatgctttgatttcaccttcatcacaatatccgatgagagagaccaaatttctatga 4920576  T
Q  231 tgaacaatcattagaagttccgcctgcatttt 262  Q
    |||||||||||||||||||  |||||||||||    
T  4920577 tgaacaatcattagaagttgtgcctgcatttt 4920608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 368 - 488
Target Start/End: Original strand, 4847367 - 4847487
Alignment:
Q  368 attaacttgaatccaatgactaacctcagattgaaattccttatatccttgctttgatgattttgaaagtatttttacagccacttgagtgtgatcatgt 467  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||  ||||||| ||||||||||| |||||||||||||| |||    
T  4847367 attaacttgaatccattgactaacctctgattgaaattccttataaccttgcttcgatgaagttgaaagcatttttacagctacttgagtgtgatcttgt 4847466  T
Q  468 aaaaagccaatgtaaactttt 488  Q
    |||| ||||||||||||||||    
T  4847467 aaaatgccaatgtaaactttt 4847487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 121 - 488
Target Start/End: Original strand, 4887558 - 4887920
Alignment:
Q  121 ataagtacctaataagtgttgttggagatttcctttggccatgtattcacaa--caatgctttgcgttcatcttcatcaccatatccaatgagagagacc 218  Q
    |||| |||||||||| |||||||| |||||||| || |||||||||||| ||  ||||||||||  |||| |||||| || |||||||||||| ||||||    
T  4887558 ataattacctaataattgttgttgcagatttccattagccatgtattcataaatcaatgctttgatttcaccttcattacaatatccaatgagggagacc 4887657  T
Q  219 aaatttctatgatgaacaatcattagaagttccgcctgcattttgagtt-aatattatctctaccaaagttaactatggaaaatattgtagcatttttaa 317  Q
    ||||||||||||||||||||  |||||||||  |||||||||   | || ||| ||||||||| |||||||||| |  ||||||| || || ||| |       
T  4887658 aaatttctatgatgaacaattgttagaagttgtgcctgcattaatatttaaattttatctctatcaaagttaac-actgaaaataatgcaggattct--- 4887753  T
Q  318 cgtaaatactattacttgaataaaatcatgattgaatatattgtgttatgattaacttgaatccaatgactaacctcagattgaaattccttatatcctt 417  Q
    |||    | |||||||| | |||| | |  ||||||||| |||| ||    ||||||| ||| ||||| |||||||| ||||||||||||||||| ||||    
T  4887754 cgttttaaatattacttaactaaact-aaaattgaatatgttgtttt---tttaactttaatacaatgtctaacctctgattgaaattccttataacctt 4887849  T
Q  418 gctttgatgattttgaaagtatttttacagccacttgagtgtgatcatgtaaaaagccaatgtaaactttt 488  Q
    || ||||||||  |||||| || || ||||| |||||||| ||||| |||| || ||||| ||||||||||    
T  4887850 gcattgatgatggtgaaagcatcttaacagcgacttgagtttgatcctgtagaatgccaaagtaaactttt 4887920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 140 - 292
Target Start/End: Complemental strand, 4752587 - 4752437
Alignment:
Q  140 tgttggagatttcctttggccatgtattcacaa--caatgctttgcgttcatcttcatcaccatatccaatgagagagaccaaatttctatgatgaacaa 237  Q
    |||||||||||||| ||||||||||||||| ||  ||||||||||  || | ||||||||| |||||||| ||| | |||||||||||||||||||||||    
T  4752587 tgttggagatttccattggccatgtattcataaatcaatgctttggtttgaccttcatcacaatatccaaggagggggaccaaatttctatgatgaacaa 4752488  T
Q  238 tcattagaagttccgcctgcattttgagttaatattatctctaccaaagttaact 292  Q
    ||||||||||||  ||||||||||| | ||    |||||||||||||||||||||    
T  4752487 tcattagaagttgtgcctgcattttaaatt----ttatctctaccaaagttaact 4752437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 126 - 290
Target Start/End: Original strand, 4792003 - 4792165
Alignment:
Q  126 tacctaataagtgttgttggagatttcctttggccatgtattcacaa--caatgctttgcgttcatcttcatcaccatatccaatgagagagaccaaatt 223  Q
    ||||| |||| |||||||| |||||||| ||||||||||| ||| ||  |||||||||   |||| ||||||||| ||| ||||||||||||||||||||    
T  4792003 tacctgataaatgttgttgtagatttccattggccatgtactcataaatcaatgctttaatttcaccttcatcacaatacccaatgagagagaccaaatt 4792102  T
Q  224 tctatgatgaacaatcattagaagttccgcctgcattttgagttaatattatctctaccaaagttaa 290  Q
    |||||||||||||||| |||||||||  ||||||||||| | ||    |||||||||||||||||||    
T  4792103 tctatgatgaacaatcgttagaagttgtgcctgcattttaaatt----ttatctctaccaaagttaa 4792165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 140 - 262
Target Start/End: Complemental strand, 4728715 - 4728591
Alignment:
Q  140 tgttggagatttcctttggccatgtattcacaa--caatgctttgcgttcatcttcatcaccatatccaatgagagagaccaaatttctatgatgaacaa 237  Q
    |||||||||||||| ||||||||||||||| ||  ||||||||||  || | ||||||||| |||||| ||||||| |||||||||||||||||||||||    
T  4728715 tgttggagatttccattggccatgtattcataaatcaatgctttgatttgaccttcatcacaatatccgatgagagggaccaaatttctatgatgaacaa 4728616  T
Q  238 tcattagaagttccgcctgcatttt 262  Q
    ||||||||||||  |||||||||||    
T  4728615 tcattagaagttgtgcctgcatttt 4728591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 126 - 295
Target Start/End: Original strand, 4773730 - 4773897
Alignment:
Q  126 tacctaataagtgttgttggagatttcctttggccatgtattcacaac--aatgctttgcgttcatcttcatcaccatatccaatgagagagaccaaatt 223  Q
    |||||||||| ||||||||||||||||| ||||||||||||||| ||   |||||||||  |||| ||||||||| ||||||||  || |||||||||||    
T  4773730 tacctaataaatgttgttggagatttccattggccatgtattcataaattaatgctttgatttcaccttcatcacaatatccaacaagggagaccaaatt 4773829  T
Q  224 tctatgatgaacaatcattagaagttccgcctgcattttgagttaatattatctctaccaaagttaactatg 295  Q
    ||||||||||||||   |||||||||  ||||||||||| | ||    |||| |||| ||||||||||||||    
T  4773830 tctatgatgaacaactgttagaagttgtgcctgcattttaaatt----ttatatctatcaaagttaactatg 4773897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 140 - 262
Target Start/End: Complemental strand, 4705976 - 4705852
Alignment:
Q  140 tgttggagatttcctttggccatgtattcacaa--caatgctttgcgttcatcttcatcaccatatccaatgagagagaccaaatttctatgatgaacaa 237  Q
    |||||||||||||| |||| |||||||||  ||  ||||||||||  || | ||||||||| |||||||| ||||| |||||||||||||||||||||||    
T  4705976 tgttggagatttccattggtcatgtattcgtaaatcaatgctttgatttgaccttcatcacaatatccaaggagagggaccaaatttctatgatgaacaa 4705877  T
Q  238 tcattagaagttccgcctgcatttt 262  Q
    || |||||||||  ||||| |||||    
T  4705876 tcgttagaagttgtgcctgtatttt 4705852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 126 - 289
Target Start/End: Original strand, 4827055 - 4827216
Alignment:
Q  126 tacctaataagtgttgttggagatttcctttggccatgtattcacaa--caatgctttgcgttcatcttcatcaccatatccaatgagagagaccaaatt 223  Q
    |||| ||||| || |||||||||||||| || ||||| |||||| ||  ||||||||||  |||  ||||||||| ||| |||||||| |||||||||||    
T  4827055 taccaaataaatgctgttggagatttccatttgccatatattcataaatcaatgctttgatttccccttcatcacaatacccaatgagtgagaccaaatt 4827154  T
Q  224 tctatgatgaacaatcattagaagttccgcctgcattttgagttaatattatctctaccaaagtta 289  Q
    || ||||||||||||   |||||||| |||||||||||| | ||    ||||||||||||||||||    
T  4827155 tcgatgatgaacaattgctagaagttgcgcctgcattttaattt----ttatctctaccaaagtta 4827216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 370 - 488
Target Start/End: Complemental strand, 4717922 - 4717804
Alignment:
Q  370 taacttgaatccaatgactaacctcagattgaaattccttatatccttgctttgatgattttgaaagtatttttacagccacttgagtgtgatcatgtaa 469  Q
    |||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||  ||||||  | || ||||| |||||||| ||||| | ||     
T  4717922 taacttgaatgcaatgtctaacctctgattgaaattccttataaccttgctttgatgatggtgaaagcctcttaacagcgacttgagtttgatcttttag 4717823  T
Q  470 aaagccaatgtaaactttt 488  Q
    || ||||| ||||||||||    
T  4717822 aatgccaaagtaaactttt 4717804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 139 - 262
Target Start/End: Complemental strand, 4718397 - 4718272
Alignment:
Q  139 ttgttggagatttcctttggccatgtattcacaa--caatgctttgcgttcatcttcatcaccatatccaatgagagagaccaaatttctatgatgaaca 236  Q
    ||||||||||||||| |||||||||||||   ||  ||||||||||  || | ||||||||| ||||||||  || | ||||||||||||||||||||||    
T  4718397 ttgttggagatttccattggccatgtatttgtaaatcaatgctttggtttgaccttcatcacaatatccaagtagggggaccaaatttctatgatgaaca 4718298  T
Q  237 atcattagaagttccgcctgcatttt 262  Q
    | |||||||||||  |||||||||||    
T  4718297 accattagaagttgtgcctgcatttt 4718272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 140 - 249
Target Start/End: Complemental strand, 4739451 - 4739340
Alignment:
Q  140 tgttggagatttcctttggccatgtattcacaa--caatgctttgcgttcatcttcatcaccatatccaatgagagagaccaaatttctatgatgaacaa 237  Q
    ||||| |||||||| ||||||||||||||| ||  ||||||| ||  || | ||||||||| |||||||| ||| |  ||||||||||||||||||||||    
T  4739451 tgttgcagatttccattggccatgtattcataaatcaatgctctgatttgaccttcatcacaatatccaaggaggggaaccaaatttctatgatgaacaa 4739352  T
Q  238 tcattagaagtt 249  Q
    ||||||||||||    
T  4739351 tcattagaagtt 4739340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 374 - 488
Target Start/End: Complemental strand, 4691574 - 4691460
Alignment:
Q  374 ttgaatccaatgactaacctcagattgaaattccttatatccttgctttgatgattttgaaagtatttttacagccacttgagtgtgatcatgtaaaaag 473  Q
    |||||| ||||| |||||||| ||||||||||||||||| |||||| ||||||||  ||||||  | || ||||| |||||||| ||||| |||| || |    
T  4691574 ttgaatacaatgtctaacctctgattgaaattccttataaccttgcattgatgatggtgaaagcctcttaacagcaacttgagtttgatcttgtagaatg 4691475  T
Q  474 ccaatgtaaactttt 488  Q
    |||| ||||||||||    
T  4691474 ccaaagtaaactttt 4691460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 488
Target Start/End: Original strand, 4920865 - 4920982
Alignment:
Q  371 aacttgaatccaatgactaacctcagattgaaattccttatatccttgctttgatgattttgaaagtatttttacagccacttgagtgtgatcatgtaaa 470  Q
    ||||||||| ||||| |||||||| ||||||||||||||||| |||||| ||||||||   |||||  | || ||||| |||||||| ||||| |||| |    
T  4920865 aacttgaatacaatggctaacctctgattgaaattccttataaccttgcattgatgatagcgaaagcctcttaacagctacttgagtttgatcttgtaga 4920964  T
Q  471 aagccaatgtaaactttt 488  Q
    | ||| | ||||||||||    
T  4920965 atgccgaagtaaactttt 4920982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 488
Target Start/End: Complemental strand, 4728502 - 4728383
Alignment:
Q  369 ttaacttgaatccaatgactaacctcagattgaaattccttatatccttgctttgatgattttgaaagtatttttacagccacttgagtgtgatcatgta 468  Q
    |||||||||||  |||| |||||||| |||||||| |||||||| |||||| ||||||||  ||||||  | || || || |||||||| ||||| ||||    
T  4728502 ttaacttgaatgtaatgtctaacctctgattgaaactccttataaccttgcattgatgatggtgaaagcctcttaaccgcgacttgagtttgatcttgta 4728403  T
Q  469 aaaagccaatgtaaactttt 488  Q
     || ||||| ||||||||||    
T  4728402 gaatgccaaagtaaactttt 4728383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 488
Target Start/End: Original strand, 4773965 - 4774084
Alignment:
Q  369 ttaacttgaatccaatgactaacctcagattgaaattccttatatccttgctttgatgattttgaaagtatttttacagccacttgagtgtgatcatgta 468  Q
    ||||||||||| ||||| |||||||| | || |||||||||||| |||||| ||||||||  |||||| || || ||||| |||| ||| ||||| ||||    
T  4773965 ttaacttgaatacaatgtctaacctctgcttcaaattccttataaccttgcattgatgatggtgaaagcatcttaacagcgacttcagtttgatcttgta 4774064  T
Q  469 aaaagccaatgtaaactttt 488  Q
     |  ||||| ||||||||||    
T  4774065 gagtgccaaagtaaactttt 4774084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 477
Target Start/End: Complemental strand, 4705741 - 4705653
Alignment:
Q  389 aacctcagattgaaattccttatatccttgctttgatgattttgaaagtatttttacagccacttgagtgtgatcatgtaaaaagccaa 477  Q
    |||||| ||||||||||||||||| |||||| ||||||||  |||||| || || ||||| |||||||| ||||| |||| || |||||    
T  4705741 aacctctgattgaaattccttataaccttgcattgatgatggtgaaagcatcttaacagcgacttgagtttgatcttgtagaatgccaa 4705653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 488
Target Start/End: Complemental strand, 4739223 - 4739108
Alignment:
Q  373 cttgaatccaatgactaacctcagattgaaattccttatatccttgctttgatgattttgaaagtatttttacagccacttgagtgtgatcatgtaaaaa 472  Q
    |||||||  |||| |||||||| ||||||||||||||||| |||||| |||||||   ||||||  | || ||||| |||||||| ||||| |||| |      
T  4739223 cttgaatgtaatgtctaacctctgattgaaattccttataaccttgcattgatgagggtgaaaggctcttaacagcgacttgagtttgatcttgtagagt 4739124  T
Q  473 gccaatgtaaactttt 488  Q
    ||||| ||||||||||    
T  4739123 gccaaagtaaactttt 4739108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 428
Target Start/End: Complemental strand, 4752375 - 4752316
Alignment:
Q  369 ttaacttgaatccaatgactaacctcagattgaaattccttatatccttgctttgatgat 428  Q
    |||||||||||  |||| |||||||| || |||||||||||||| |||||| ||||||||    
T  4752375 ttaacttgaatgtaatgtctaacctccgaatgaaattccttataaccttgcattgatgat 4752316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 463
Target Start/End: Original strand, 4792223 - 4792299
Alignment:
Q  387 ctaacctcagattgaaattccttatatccttgctttgatgattttgaaagtatttttacagccacttgagtgtgatc 463  Q
    |||||||| ||||||||||| ||||| |||||| ||||||||  |||||| || || | ||| |||||||| |||||    
T  4792223 ctaacctctgattgaaattctttataaccttgcattgatgatggtgaaagcatcttaatagcaacttgagtttgatc 4792299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 4910662 - 4910710
Alignment:
Q  286 gttaactatggaaaatattgtagcatttttaacgtaaatactattactt 334  Q
    ||||| ||||||| ||||||||| ||| |||| ||||||||||||||||    
T  4910662 gttaaatatggaatatattgtaggattcttaatgtaaatactattactt 4910710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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