View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20635_low_6 (Length: 394)
Name: NF20635_low_6
Description: NF20635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20635_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 21 - 321
Target Start/End: Complemental strand, 9049673 - 9049373
Alignment:
| Q |
21 |
atagccacagcaagagcatgtttctcatcctgatctgtccttgaagccacacttgtagcagtaaccacatcatgcttcaattttgttggtgtactttgtt |
120 |
Q |
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| T |
9049673 |
atagccacagcaagagcatgtttctcatcctgatctgtccttgaagccacacttgtagcagtaaccacatcatgcttcaattttgttggtgtactttgtt |
9049574 |
T |
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| Q |
121 |
gagtattattcactgtttcatgattcactggtttcctaaaaatccaccttcttttttctctcttctacnnnnnnnnnnnngannnnnnnnncattgtttt |
220 |
Q |
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| T |
9049573 |
gagtattattcactgtttcatgattcactggtttcctaaaaatccaccttcttttttctctcttctacaaaaataagaaatattttatttacgttgtttt |
9049474 |
T |
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| Q |
221 |
cattctttcaatacttcatttccatgaattagatagtaaaaacaaaagggtcattaaaactacaaagacaaatgaaaaatttacagaattttttgaagta |
320 |
Q |
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|||||||||||| |||||||||||||||||| | |||| |||||||||||||| |||||||| ||| | |||||||||||| |||||||||||| ||||| |
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| T |
9049473 |
cattctttcaatgcttcatttccatgaattacaaagtagaaacaaaagggtcactaaaactataaacaaaaatgaaaaattaacagaatttttttaagta |
9049374 |
T |
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| Q |
321 |
c |
321 |
Q |
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| T |
9049373 |
c |
9049373 |
T |
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