View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20635_low_7 (Length: 392)
Name: NF20635_low_7
Description: NF20635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20635_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 48703200 - 48702844
Alignment:
| Q |
18 |
agaataaaagttcagcttgataattgaaatcgaaaccaaatacttgctagagttgaaccatactttcattctttatatagctattaagtttctcatgctt |
117 |
Q |
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| T |
48703200 |
agaataaaagctcagcttgataattgaaatcgaaaccaaatacttgctagagttgaaccatactttcattctttatatagctattaagtttctcatgctt |
48703101 |
T |
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| Q |
118 |
tgtgggcttgtggcagtatatgcaaccatagaattttcgttcaagtcatatttacgaattattggcatgcttgatatatcgagaaattcaattgatgtat |
217 |
Q |
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| T |
48703100 |
tgtgggcttgtggcagtatatgcaaccatagaattttcgttcaagtcatatttacgaattattggcatgcttgatatatcgagaaattcaattgatgtat |
48703001 |
T |
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| Q |
218 |
gcacttaaccggcccaatacatatagaatcctaattcaagtattttcaaattaaattttcggattgtgtttataacttaaacaaagaaggatgtatttaa |
317 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
48703000 |
gcacttaaccggcctaatacatatagaatcctaattcaagtattttcaaattaaattttcggattgtgtttataacttaaacaaagaaggatgcatttaa |
48702901 |
T |
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| Q |
318 |
gaataaaaacttcataaaagaaaaagagaagacgtattgtgacaaatttttgtgttc |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48702900 |
gaataaaaacttcataaaagaaaaagagaagacgtattgtgacaaatttttgtgttc |
48702844 |
T |
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