View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20636_high_1 (Length: 662)
Name: NF20636_high_1
Description: NF20636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20636_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 77 - 651
Target Start/End: Complemental strand, 43612640 - 43612052
Alignment:
| Q |
77 |
atctaaaccgatacccaaaggatatatttagtttgatttttcaagttaattggatttatc-------gttggaaaccatacatacata----ttacattc |
165 |
Q |
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| T |
43612640 |
atctaaaccgatacacaaaggatatatttagtttgatttttcaagttaattggatttatcaaatcccgttggaaaccatacatacatacatattacattc |
43612541 |
T |
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| Q |
166 |
atacacgtacctttgcacatttgagtctctcattcattctcaatttctcatatccaaatgtcatcatactcatattattatcatcctttccccaccagca |
265 |
Q |
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| T |
43612540 |
atacacgtacctttgcacatttgagtctctcattcattctcaatttctcatatccaaatgtcatcatactcatattattatcatcctttccccaccagca |
43612441 |
T |
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| Q |
266 |
aagcttttccaatttggcagccactgtcacagcagcagcactctttcccatactacgcccgccaccggcagcagttactctcttctccacttctcagaca |
365 |
Q |
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| T |
43612440 |
aagcttttccaatttggcagccactgtcacagcaacagcactctttcccatactacggccgccaccggcagcagttactctcttctccacttctcagaca |
43612341 |
T |
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| Q |
366 |
acacaggcttccttgttcaaggcttcaggaaatagtatctgttgcctcagagtcacaagaacaagtgaggcagagtgaaaaccccaacaacaagaaaaac |
465 |
Q |
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| T |
43612340 |
acacaggcttccttgttcaaggcttcaggaaatagtatctgttgcctcagagtcacaagaacaagtgaggcagagtgaaaaccccaacaacaagaaaaac |
43612241 |
T |
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| Q |
466 |
tccaagnnnnnnnnnnnnnnnnnnnnagaag---tgggaatttctaaaatacaagtgcctagacagaaacacatccctgtttccaagtctctgcttctag |
562 |
Q |
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| T |
43612240 |
tccaaggatgatgatgatgatgatgatgaagaagtgggaatttctaaaatacaagtgcctagacagaaacacatccctgtttccaagtcccagcttctag |
43612141 |
T |
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| Q |
563 |
atgcaatcctctctaacatgcttcatcaagatactgctcatcactttcgccttctcacctcgtaagtactatcaatttcctatattcat |
651 |
Q |
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| T |
43612140 |
atgcaatcctctctaacatgcttcatcaagatactgctcatcactttcgccttctcacctcgtaagtactatcaatttcctatattcat |
43612052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43612716 - 43612675
Alignment:
| Q |
1 |
gggtgactgacttctctcaatcgtcacccgaaccaataatga |
42 |
Q |
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| T |
43612716 |
gggtgactgagttctctcaatcgtcacccgaaccaataatga |
43612675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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