View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20636_high_4 (Length: 434)
Name: NF20636_high_4
Description: NF20636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20636_high_4 |
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| [»] scaffold1084 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 2899558 - 2899147
Alignment:
| Q |
18 |
aaatctacggttgggtatctggttgagaccagatctttgtgcattggtgagcttcttatacttcatagattcctcaaaacctgatgctttttcccagaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2899558 |
aaatctacggttgggtatctggttgagaccagatctttgtgcattggtgagcttcttatacttcatagattcctcaaaacctgatgctttttcccagaag |
2899459 |
T |
|
| Q |
118 |
agaccttcccaagttggaaaatatgttcctttgaataaagtgtgttcaagaattcgttcaattcccccaagagcttgaataacatcagttcggtaattat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2899458 |
agaccttcccaagttggaaaatatgttcctttgaataaagtgtgttcaagaatttgttcaattcctccaagagcttgaataacatcagttcggtaattat |
2899359 |
T |
|
| Q |
218 |
tcaagttccacaacttcccatcatgcctctggtgtgtccaccagaagggattttgttttaaaacttgatactgcttgaagtctaaacgtaccctccatcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2899358 |
tcaagttccacaacttcccatcatgcctctggtgtgtccaccagaagggattttgttttaaaacttgatactgcttgaagtctaaacgtaccctccatcc |
2899259 |
T |
|
| Q |
318 |
tttatcataagccaaagtgtgtctatccttctgaaacaaagtgttaatacgtggaatcccttggtcccatgagtcttccaaatcctcaagggtcaagcgc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2899258 |
tttatcataagccaaagtgtgtctatccttctgaaacaaagtgttaatacgtggaatcccttggtcccatgagtcttccaaatcctcaagggtcaagcgc |
2899159 |
T |
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| Q |
418 |
ctattctgtgct |
429 |
Q |
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|||||||||||| |
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| T |
2899158 |
ctattctgtgct |
2899147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 139 - 392
Target Start/End: Original strand, 44779388 - 44779641
Alignment:
| Q |
139 |
tatgttcctttgaataaagtgtgttcaagaattcgttcaattcccccaagagcttgaataacatcagttcggtaattattcaagttccacaacttcccat |
238 |
Q |
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||||||||||||||||| |||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44779388 |
tatgttcctttgaataatgtgtgttcaagaattccttcaactcccccaagggcttgaataacatcagttcggtaattattcaagttccacaacttcccat |
44779487 |
T |
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| Q |
239 |
catgcctctggtgtgtccaccagaagggattttgttttaaaacttgatactgcttgaagtctaaacgtaccctccatcctttatcataagccaaagtgtg |
338 |
Q |
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| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
44779488 |
cgtgcctctggtgtgtccaccagaagggattttgttttagaacttgatattgcttgaagtctgtacgcaccctccatcctttatcataagccaaagtgtg |
44779587 |
T |
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| Q |
339 |
tctatccttctgaaacaaagtgttaatacgtggaatcccttggtcccatgagtc |
392 |
Q |
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|||||||||||||||||||||||| |||||||| || ||| |||||||||||| |
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| T |
44779588 |
tctatccttctgaaacaaagtgttgatacgtggtattcctctgtcccatgagtc |
44779641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 139 - 392
Target Start/End: Original strand, 39876158 - 39876409
Alignment:
| Q |
139 |
tatgttcctttgaataaagtgtgttcaagaattcgttcaattcccccaagagcttgaataacatcagttcggtaattattcaagttccacaacttcccat |
238 |
Q |
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||||||||||||||||| |||||||||||||||| ||||| ||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39876158 |
tatgttcctttgaataatgtgtgttcaagaattccttcaactcctccaagggcttgaataacatcagttcggtaattattcaaattccacaacttcccat |
39876257 |
T |
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| Q |
239 |
catgcctctggtgtgtccaccagaagggattttgttttaaaacttgatactgcttgaagtctaaacgtaccctccatcctttatcataagccaaagtgtg |
338 |
Q |
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| |||||||||||||||| |||||| ||| |||||||| ||||||||| |||||||| ||| ||| |||||||||||||||||||||||||||| ||| |
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| T |
39876258 |
cgtgcctctggtgtgtcccccagaaagga--ttgttttagaacttgatattgcttgaaatctctacgcaccctccatcctttatcataagccaaagcgtg |
39876355 |
T |
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| Q |
339 |
tctatccttctgaaacaaagtgttaatacgtggaatcccttggtcccatgagtc |
392 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
39876356 |
tctatctttctgaaacaaagtgttaatacgtggaattcctctgtcccatgagtc |
39876409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 44778431 - 44778551
Alignment:
| Q |
18 |
aaatctacggttgggtatctggttgagaccagatctttgtgcattggtgagcttcttatacttcatagattcctcaaaacctgatgctttttcccagaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44778431 |
aaatctacggttgggtatctggttgagaccagatctctgtgcattggtgagcttcttatacttcatagattcctcaaaacctgatgccttttcccagaag |
44778530 |
T |
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| Q |
118 |
agaccttcccaagttggaaaa |
138 |
Q |
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||||| ||||||||||||||| |
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| T |
44778531 |
agaccctcccaagttggaaaa |
44778551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 39875283 - 39875403
Alignment:
| Q |
18 |
aaatctacggttgggtatctggttgagaccagatctttgtgcattggtgagcttcttatacttcatagattcctcaaaacctgatgctttttcccagaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
39875283 |
aaatctacggttgggtatctggttgagaccagatctctgtgcattggtgagcttcttatacttcatagattcctcgaaacctgatgccttttcccagaat |
39875382 |
T |
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| Q |
118 |
agaccttcccaagttggaaaa |
138 |
Q |
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||||||||||||||||||||| |
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| T |
39875383 |
agaccttcccaagttggaaaa |
39875403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 39876524 - 39876561
Alignment:
| Q |
392 |
cttccaaatcctcaagggtcaagcgcctattctgtgct |
429 |
Q |
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||||||||||||||||||||||||| ||||| |||||| |
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| T |
39876524 |
cttccaaatcctcaagggtcaagcgtctattttgtgct |
39876561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 44779758 - 44779795
Alignment:
| Q |
392 |
cttccaaatcctcaagggtcaagcgcctattctgtgct |
429 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||| |
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| T |
44779758 |
cttccaaatcctcaagggtcaagcgtctattttgtgct |
44779795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1084 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: scaffold1084
Description:
Target: scaffold1084; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 260 - 392
Target Start/End: Complemental strand, 2644 - 2511
Alignment:
| Q |
260 |
agaagggattttgtt-ttaaaacttgatactgcttgaagtctaaacgtaccctccatcctttatcataagccaaagtgtgtctatccttctgaaacaaag |
358 |
Q |
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||||||||||||| | ||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2644 |
agaagggattttggtgttaaaacttgatactgcttaaagtctgtgtgcaccctccatcctttatcataagccaaagtgtgtctatccttctgaaacaaag |
2545 |
T |
|
| Q |
359 |
tgttaatacgtggaatcccttggtcccatgagtc |
392 |
Q |
| |
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||||||||||||| || ||| ||||||| |||| |
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| T |
2544 |
tgttaatacgtggtattcctctgtcccattagtc |
2511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1084; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 2717 - 2656
Alignment:
| Q |
162 |
ttcaagaattcgttcaattcccccaagagcttgaataacatcagttcggtaattattcaagt |
223 |
Q |
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||||||||||| ||||| || ||||| ||||||||||||||||||| |||||| ||||||| |
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| T |
2717 |
ttcaagaattccttcaacacctccaagggcttgaataacatcagttctgtaattgttcaagt |
2656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1084; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 428
Target Start/End: Complemental strand, 2396 - 2360
Alignment:
| Q |
392 |
cttccaaatcctcaagggtcaagcgcctattctgtgc |
428 |
Q |
| |
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|||||||||||||||||||||||| |||||| ||||| |
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| T |
2396 |
cttccaaatcctcaagggtcaagcacctattttgtgc |
2360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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